Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005897`

染色体: Chr01 坐标: 74881056-74885591 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005897`
名称	SmilChr01G005897
描述	alkaline/neutral invertase E, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	74881056 - 74885591 / `-`

ID 对照

NCBI Gene ID	`LOC131006189`
GeneID	`131006189`
locus_tag	`-`
NCBI Name	`LOC131006189`
原始查询	`LOC131006189`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	alkaline/neutral invertase E, chloroplastic-like
产物	alkaline/neutral invertase E%2C chloroplastic-like
Arabidopsis	`AT5G22510` (INV-E) alkaline/neutral invertase [Source:NCBI gene (formerly Entrezgene);Acc:832312] identity=67.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os02g0529400` (OsNIN3) - identity=72.8; qcov=0.903; evalue=0; confidence=high
GO	GO:0004575 (sucrose alpha-glucosidase activity); GO:0005987 (sucrose catabolic process); GO:0009507 (chloroplast); GO:0033926 (endo-alpha-N-acetylgalactosaminidase activity)
KEGG	smil00052 (Galactose metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF12899 (Glyco_hydro_100)
InterPro	-
eggNOG	-
NR	GeneID:131006189

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057789351.1`
2	Chloroplast stroma	叶绿体基质	0.40000	`XP_057789351.1`
3	Mitochondrion	线粒体	0.20000	`XP_057789351.1`
4	Nucleus	细胞核	0.00000	`XP_057789351.1`
5	Chromosome	染色体	0.00000	`XP_057789351.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:74881325`	`CG`	`C`	1bp_deletion	frameshift_variant	29	A7,B108,B112,B124,B42,B43,B53,B6,B61,B65,B71,B76,B82,B89,B93,C20,C28,C33,C39,C4,C42,C43,C56,C62,C63,C67,C79,C86,D2
`Chr1:74881415`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A25,B26,C87,C9
`Chr1:74881454`	`C`	`CT`	1bp_insertion	frameshift_variant	27	A7,B108,B112,B124,B42,B43,B6,B61,B65,B76,B82,B89,B93,C20,C28,C39,C4,C42,C43,C56,C62,C63,C67,C79,C86,D2,D4
`Chr1:74881557`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:74881586`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:74881619`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B71,B93,C62
`Chr1:74882086`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B18
`Chr1:74882204`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B113
`Chr1:74882204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B113
`Chr1:74882342`	`G`	`GT`	1bp_insertion	frameshift_variant	1	B100
`Chr1:74882342`	`G`	`GT`	1bp_insertion	CDS_variant	1	B100
`Chr1:74882455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B53,B65,C42

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789351.1

640 aa

320

640

Glyco_hydro_100

PF12899 Glyco_hydro_100 156-598 aa

XP_057789352.1

640 aa

320

640

Glyco_hydro_100

PF12899 Glyco_hydro_100 156-598 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789351.1`	Pfam	`PF12899`	Glyco_hydro_100	Repeat	156	598	6.7e-222	737.6	Alkaline and neutral invertase
`XP_057789352.1`	Pfam	`PF12899`	Glyco_hydro_100	Repeat	156	598	6.7e-222	737.6	Alkaline and neutral invertase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933368.1
AATTTCTACATAAAACAAATCAAGAAATCATTTCCAATTTTCCATAAGTAGAATTCTTTCATAAATCTTTTTTTGAAGAACACAACGTAAACTAAAAGAGGAACACTCTCATTCCTGAACAGCTTCTTCCCAATCAATCCATTTCAGCTGAGAGAGAGAGAGAGAAATTTTTCCAATTATAAATATTTGTTCAACTGAAACTCGTTCAAGCAACGCAGTCATTTTGGTTCGAGAAAAGCTCCCACACATTAGATTTTGTT...

XM_057933369.1
ATCATTTCCAATTTTCCATAAGTAGAATTCTTTCATAAATCTTTTTTTGAAGAACACAACGTAAACTAAAAGAGGAACACTCTCATTCCTGAACAGCTTCTTCCCAATCAATCCATTTCAGCTGAGAGAGAGAGAGAGAAATTTTTCCAATTATAAATATTTGTTCAACTGAAACTCGTTCAAGCAACGCAGTCATTTTGGTTCGAGAAAAGCTCCCACACATTAGATTTTGTTATAATTTCTCTTCGCAGCTGAAAGCA...

CDS

2 records

下载 CDS FASTA

LOC131006189
ATGGCTACCGCTCAAACAGTATTACAAGTTTGTGGTGGAAATGTACGTTGCCTTTTTAGTTCAAAGCCCCATCTCAGCAGATCTTGGTCAGGGTCTTGTTCGAGGTCTTTTGTAAAATATAAAAGAAGAAAGGCTGCAGCTTGTTCCAAAGTTATCAACCACTTGTATAGATCATACAACGATGGTGCTTGCCAGTTTCCTCATTCAGCTCATGCCAACGTTACCCCCAACCGCTTAGGGCTCAGCAGATGCAACTGTGA...

Protein

2 records

下载 Protein FASTA

XP_057789351.1
MATAQTVLQVCGGNVRCLFSSKPHLSRSWSGSCSRSFVKYKRRKAAACSKVINHLYRSYNDGACQFPHSAHANVTPNRLGLSRCNCERAESLRGLNADTAKEYNAINGNRPSVEFDKIKESILENGALSSNGGIHSNGTIRDTLHESITDSIEDEAWDLLRESIVYYCNSPVGTIAAKDPSESTNILNYDHVFIRDFIPSGLAFLLKGEYDIVRNFLLHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLEGDDTATEE...

XP_057789352.1
MATAQTVLQVCGGNVRCLFSSKPHLSRSWSGSCSRSFVKYKRRKAAACSKVINHLYRSYNDGACQFPHSAHANVTPNRLGLSRCNCERAESLRGLNADTAKEYNAINGNRPSVEFDKIKESILENGALSSNGGIHSNGTIRDTLHESITDSIEDEAWDLLRESIVYYCNSPVGTIAAKDPSESTNILNYDHVFIRDFIPSGLAFLLKGEYDIVRNFLLHTLQLQSWEKTMDCHSPGQGLMPASFKVRTVPLEGDDTATEE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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