Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005987`

染色体: Chr01 坐标: 75494137-75497208 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005987`
名称	SmilChr01G005987
描述	receptor-like protein 7
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	75494137 - 75497208 / `-`

ID 对照

NCBI Gene ID	`LOC131006256`
GeneID	`131006256`
locus_tag	`-`
NCBI Name	`LOC131006256`
原始查询	`LOC131006256`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein 7
产物	receptor-like protein 7
Arabidopsis	`AT1G47890` (RLP7) receptor like protein 7 [Source:NCBI gene (formerly Entrezgene);Acc:841206] identity=34.1; qcov=1.13; evalue=3.08e-124; confidence=low
Rice	`Os01g0163000` - identity=33.3; qcov=1.14; evalue=4.45e-120; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131006256

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057789421.1`
2	Nucleus	细胞核	0.00000	`XP_057789421.1`
3	Chromosome	染色体	0.00000	`XP_057789421.1`
4	Centromere	着丝粒	0.00000	`XP_057789421.1`
5	Chromatin	染色质	0.00000	`XP_057789421.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:75494308`	`C`	`CT`	1bp_insertion	frameshift_variant	1	C78
`Chr1:75494308`	`C`	`CT`	1bp_insertion	CDS_variant	1	C78
`Chr1:75494312`	`G`	`A`	EMS_canonical_SNV	stop_gained	188	A1,A10,A11,A14,A15,A16,A19,A2,A20,A21,A22,A23,A24,A25,A5,A6,A9,B1,B101,B102,B103,B105,B107,B110,B112,B113,B114,B117,B118,B12,B120,B121,B122,B124,B125,B126,B127,B128,B129,B130,B133,B134,B135,B138,B139,B140,B15,B17,B18,B19,B2,B20,B22,B23,B24,B26,B27,B28,B3,B30,B32,B33,B35,B36,B38,B39,B4,B40,B41,B42,B44,B45,B46,B47,B48,B49,B52,B53,B54,B55,B56,B57,B59,B6,B60,B64,B66,B67,B68,B7,B71,B72,B74,B76,B77,B78,B79,B80,B82,B83,B85,B86,B87,B88,B89,B9,B90,B91,B92,B93,B94,B96,B98,B99,C1,C10,C11,C12,C14,C15,C16,C18,C19,C20,C22,C23,C24,C25,C27,C29,C3,C30,C31,C32,C33,C35,C36,C37,C38,C4,C40,C42,C43,C44,C45,C46,C47,C48,C49,C5,C51,C54,C55,C56,C57,C59,C6,C60,C61,C63,C67,C68,C69,C7,C70,C71,C74,C75,C76,C77,C79,C8,C80,C81,C82,C83,C84,C85,C86,C9,D1,D10,D2,D3,D4,D5,D7,D8
`Chr1:75494349`	`T`	`TC`	1bp_insertion	frameshift_variant	148	A10,A11,A15,A16,A2,A20,A21,A22,A23,A24,A25,A5,A6,A8,A9,B1,B101,B102,B103,B104,B105,B106,B107,B112,B114,B117,B12,B120,B121,B124,B126,B127,B128,B129,B130,B133,B134,B135,B138,B139,B15,B17,B19,B2,B22,B23,B24,B26,B28,B3,B32,B33,B35,B38,B4,B40,B41,B42,B44,B46,B47,B48,B49,B52,B53,B54,B55,B59,B6,B60,B64,B66,B68,B71,B72,B78,B80,B82,B85,B87,B88,B89,B9,B91,B92,B93,B96,B97,B98,B99,C11,C14,C15,C16,C17,C20,C22,C23,C24,C25,C27,C29,C3,C30,C31,C32,C35,C36,C38,C4,C40,C41,C44,C45,C46,C47,C48,C49,C5,C50,C51,C53,C55,C56,C57,C6,C60,C61,C62,C64,C65,C68,C69,C71,C77,C79,C8,C80,C81,C82,C84,C9,D1,D2,D4,D5,D7,D8
`Chr1:75494359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B30,B91
`Chr1:75494368`	`CT`	`C`	1bp_deletion	frameshift_variant	41	A10,A9,B1,B102,B117,B127,B129,B134,B20,B22,B27,B30,B32,B52,B60,B64,B66,B68,B79,B87,B89,B91,B93,B94,C11,C14,C15,C16,C20,C31,C32,C38,C44,C48,C61,C69,C8,C81,D1,D10,D5
`Chr1:75494388`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B42,C11,C24,C49
`Chr1:75494405`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B101,B22,B89,B91,C38
`Chr1:75494447`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B126,B5,B80
`Chr1:75494447`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B126,B5,B80
`Chr1:75494472`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:75494540`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B130,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789421.1

852 aa

426

852

LRRNT_2

LRR_14

LRR_1

LRR_8

LRR_1

LRR_6

LRR_1

LRR_8

LRR_6

LRR_1

PF08263 LRRNT_2 23-64 aa PF23598 LRR_14 202-403 aa PF00560 LRR_1 203-225 aa PF13855 LRR_8 250-310 aa PF00560 LRR_1 252-273 aa PF00560 LRR_1 276-296 aa PF13516 LRR_6 298-312 aa PF00560 LRR_1 324-337 aa PF00560 LRR_1 375-393 aa PF00560 LRR_1 444-464 aa PF00560 LRR_1 468-486 aa PF00560 LRR_1 492-508 aa PF00560 LRR_1 513-535 aa PF00560 LRR_1 664-686 aa PF13855 LRR_8 664-723 aa PF13516 LRR_6 686-700 aa PF00560 LRR_1 688-710 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789421.1`	Pfam	`PF08263`	LRRNT_2	Family	23	64	1.2e-06	29.4	Leucine rich repeat N-terminal domain
`XP_057789421.1`	Pfam	`PF23598`	LRR_14	Repeat	202	403	3.1e-24	86.1	Leucine-rich repeat region
`XP_057789421.1`	Pfam	`PF00560`	LRR_1	Repeat	203	225	6e-49	154.1	Leucine Rich Repeat
`XP_057789421.1`	Pfam	`PF13855`	LRR_8	Repeat	250	310	5.4e-42	142.1	Leucine rich repeat
`XP_057789421.1`	Pfam	`PF00560`	LRR_1	Repeat	252	273	6e-49	154.1	Leucine Rich Repeat
`XP_057789421.1`	Pfam	`PF00560`	LRR_1	Repeat	276	296	6e-49	154.1	Leucine Rich Repeat
`XP_057789421.1`	Pfam	`PF13516`	LRR_6	Repeat	298	312	5.5e-13	48.6	Leucine Rich repeat
`XP_057789421.1`	Pfam	`PF00560`	LRR_1	Repeat	324	337	6e-49	154.1	Leucine Rich Repeat
`XP_057789421.1`	Pfam	`PF00560`	LRR_1	Repeat	375	393	6e-49	154.1	Leucine Rich Repeat
`XP_057789421.1`	Pfam	`PF00560`	LRR_1	Repeat	444	464	6e-49	154.1	Leucine Rich Repeat
`XP_057789421.1`	Pfam	`PF00560`	LRR_1	Repeat	468	486	6e-49	154.1	Leucine Rich Repeat
`XP_057789421.1`	Pfam	`PF00560`	LRR_1	Repeat	492	508	6e-49	154.1	Leucine Rich Repeat
`XP_057789421.1`	Pfam	`PF00560`	LRR_1	Repeat	513	535	6e-49	154.1	Leucine Rich Repeat
`XP_057789421.1`	Pfam	`PF00560`	LRR_1	Repeat	664	686	6e-49	154.1	Leucine Rich Repeat
`XP_057789421.1`	Pfam	`PF13855`	LRR_8	Repeat	664	723	5.4e-42	142.1	Leucine rich repeat
`XP_057789421.1`	Pfam	`PF13516`	LRR_6	Repeat	686	700	5.5e-13	48.6	Leucine Rich repeat
`XP_057789421.1`	Pfam	`PF00560`	LRR_1	Repeat	688	710	6e-49	154.1	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933438.1
TGTATTTAAAGCAAATGAATGTATCTTAGCTGCAAGTTTGATTAATTAGTTTGTTTTCACAATGCTTTCAAAGTTGTTTTTCATTTCTTTACTTTCCTCCTTCATTTTCCTTACTCATTCTTGTTTGCGCACACTACTCTTACCAATCCTTATACATATATCAACTTGATAAAAATGAATTTTAAACGATATTGGGATTATCTTTTGCACTTTTTCGCTTCCACACTTGCTTTTCTTCTCTATAATAATCTGGGTAACTA...

CDS

1 records

下载 CDS FASTA

LOC131006256
ATGCTTTCAAAGTTGTTTTTCATTTCTTTACTTTCCTCCTTCATTTTCCTTACTCATTCTTGTCTTGACCATCAAAAAACCTTGTTGCTTCAACTCAAGGATGAGTTGAGCTTCAATTCTTCTCTTTCAACAAAATTGGTGCGATGGAATGAAAGGGATGAGTGCTGCAAGTGGCCCGGTGTGGCATGTGATGCTGCTGGCTACGTCGTTAGTTTGCAGCTCCATAATGAGTCCATTTCTGGTGGAATCGCGGATTCATC...

Protein

1 records

下载 Protein FASTA

XP_057789421.1
MLSKLFFISLLSSFIFLTHSCLDHQKTLLLQLKDELSFNSSLSTKLVRWNERDECCKWPGVACDAAGYVVSLQLHNESISGGIADSSSLFRLEYLENLNLAYNKFNYTPIPKGIHNLTYLTHLNLSNAGFGGQVPLQLSFLRRLVCLDISNWDFGALSIEYPNLEMLLPNLTGLRELYLDGVKVTSSHERRKWSHIISSYLPNLTALSLRGCGLSGPLAKSFGQLHSLSFLRLNYNDLGPELPDLFANFPTLTTLSLRGC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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