Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G005979`

染色体: Chr01 坐标: 75445761-75451046 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G005979`
名称	SmilChr01G005979
描述	3-phosphoinositide-dependent protein kinase 2-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	75445761 - 75451046 / `-`

ID 对照

NCBI Gene ID	`LOC131006267`
GeneID	`131006267`
locus_tag	`-`
NCBI Name	`LOC131006267`
原始查询	`LOC131006267`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-phosphoinositide-dependent protein kinase 2-like
产物	3-phosphoinositide-dependent protein kinase 2-like
Arabidopsis	`AT3G10540` (AT3G10540) 3-phosphoinositide-dependent protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:820219] identity=80.8; qcov=0.978; evalue=0; confidence=high
Rice	`Os01g0872800` (PDK1) - identity=67.9; qcov=0.996; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction)
KEGG	smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF14531 (Kinase-like); PF14593 (PH_3)
InterPro	-
eggNOG	-
NR	GeneID:131006267

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057789440.1`
2	Nucleus	细胞核	0.40000	`XP_057789440.1`
3	Chromosome	染色体	0.00000	`XP_057789440.1`
4	Centromere	着丝粒	0.00000	`XP_057789440.1`
5	Chromatin	染色质	0.00000	`XP_057789440.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:75446162`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B26,B32,B99,C20
`Chr1:75446204`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A11,B127,B51,C16
`Chr1:75446972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr1:75446984`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr1:75447007`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B127,B131,B22,B25
`Chr1:75447307`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B45,B66,B82,C26
`Chr1:75447604`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr1:75448154`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B45,B66,B82,C26
`Chr1:75448494`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B6,C63,C67
`Chr1:75448834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B132,B80
`Chr1:75448906`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B132
`Chr1:75448951`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B118,B6,B71,C2,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789440.1

506 aa

253

506

Pkinase

PK_Tyr_Ser-Thr

Kinase-like

PH_3

PF00069 Pkinase 63-329 aa PF07714 PK_Tyr_Ser-Thr 64-313 aa PF14531 Kinase-like 165-278 aa PF14593 PH_3 403-505 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789440.1`	Pfam	`PF00069`	Pkinase	Domain	63	329	3.4e-68	230.6	Protein kinase domain
`XP_057789440.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	64	313	1.2e-29	104.1	Protein tyrosine and serine/threonine kinase
`XP_057789440.1`	Pfam	`PF14531`	Kinase-like	Family	165	278	3.5e-09	37.1	Kinase-like
`XP_057789440.1`	Pfam	`PF14593`	PH_3	Domain	403	505	3.5e-30	104.8	PH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933457.1
AACTTTTTTTTTAAAGGAAAAAAATAAAAGAAAAACTAAGATGTAAATAAACGTTGCTCCTAAAACAAGGGAATACTTTATTACAATGGTTCAAGAATTACAATGCCAATCCCATCATTTTGTTTTTCATTTTCATGTAGTCTTCTCAATCCCCATCCCCATACATATGATATGCCTATTTCCTTCTTTCCGCTCATCCTAATCCATAGCTTTTCCTTTTCAAGGCCTTGAAAAATTCATAAAGTTCATACCTTTTTCAG...

CDS

1 records

下载 CDS FASTA

LOC131006267
ATGTTGGCATTGGTTGGAGGAGGGGAAGCAGTTAATACAATGGAGAAGGAATTTGATTCAAAGATGAGGATTCAGAGCAACAGTTCTTCATCCAACAATGATGGTGGTGGTGGTAATGGTGATTCTCAGAGATCTAAGAATTTCTCCTTCAGAGCGCCACAGGAGAATTTTAGCATTCAAGATTTTGAATTGGGCAAGATTTATGGTGTTGGTTCCTATTCAAAGGTTGTTCGAGCCAAGAAGAAAGACACCGGCAAGAT...

Protein

1 records

下载 Protein FASTA

XP_057789440.1
MLALVGGGEAVNTMEKEFDSKMRIQSNSSSSNNDGGGGNGDSQRSKNFSFRAPQENFSIQDFELGKIYGVGSYSKVVRAKKKDTGKIYAMKIMDKKFITKENKTAYVKLERIVLDQLDHPGVVRLFFTFQDSFSLYMALESCEGGELFDQITRKGRLSEEDARFYAAEVVDALEYIHSMGLIHRDIKPENLLLTEDGHIKVADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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