Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G006022`

染色体: Chr01 坐标: 75800542-75805692 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G006022`
名称	SmilChr01G006022
描述	uncharacterized SmilChr01G006022
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	75800542 - 75805692 / `-`

ID 对照

NCBI Gene ID	`LOC131006278`
GeneID	`131006278`
locus_tag	`-`
NCBI Name	`LOC131006278`
原始查询	`LOC131006278`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830324]; symbol=AT5G04460; hit=AT5G04460; species=arabidopsis; confidence=high
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830324]; symbol=AT5G04460; hit=AT5G04460; species=arabidopsis; confidence=high
Arabidopsis	`AT5G04460` (AT5G04460) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830324] identity=61.7; qcov=1.04; evalue=0; confidence=high
Rice	`Os02g0823300` (OsRFP) - identity=47.1; qcov=0.75; evalue=1.02e-148; confidence=high
GO	-
KEGG	-
Pfam	PF13920 (zf-C3HC4_3)
InterPro	-
eggNOG	-
NR	GeneID:131006278

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789450.1`
2	Cytoplasm	细胞质	0.80000	`XP_057789450.1`
3	Nucleoplasm	核质	0.60000	`XP_057789453.1`
4	Cytosol	细胞质基质	0.40000	`XP_057789450.1`
5	Nuclear body	核内小体	0.20000	`XP_057789450.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:75800739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:75800972`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B44,D10
`Chr1:75800987`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr1:75801193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr1:75801209`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B121,B90,B92,C30
`Chr1:75801225`	`C`	`CTG`	2bp_insertion	frameshift_variant	171	A10,A11,A13,A15,A16,A18,A19,A2,A22,A23,A24,A25,A4,A5,A6,A7,A8,A9,B10,B100,B101,B102,B103,B105,B106,B108,B109,B11,B110,B111,B113,B114,B118,B119,B12,B121,B122,B123,B124,B126,B130,B131,B132,B134,B135,B137,B138,B139,B140,B18,B19,B2,B22,B23,B24,B25,B26,B27,B3,B30,B31,B32,B35,B36,B38,B39,B4,B40,B41,B42,B43,B46,B49,B5,B50,B52,B55,B56,B57,B59,B6,B60,B62,B64,B67,B69,B70,B71,B74,B75,B79,B80,B81,B82,B83,B84,B85,B89,B9,B91,B95,B96,B98,B99,C1,C10,C12,C13,C14,C15,C17,C18,C19,C2,C20,C21,C23,C24,C25,C26,C27,C29,C3,C31,C34,C36,C38,C39,C4,C40,C41,C42,C44,C45,C47,C48,C49,C5,C50,C52,C53,C54,C55,C56,C58,C59,C6,C61,C62,C63,C64,C66,C67,C7,C70,C73,C74,C79,C80,C82,C83,C86,D1,D10,D2,D3,D4,D6,D7,D8,D9
`Chr1:75801226`	`AAG`	`A`	2bp_deletion	frameshift_variant	131	A10,A11,A13,A15,A16,A2,A22,A25,A4,A5,A6,A7,A8,B10,B100,B101,B102,B105,B106,B108,B109,B11,B110,B111,B113,B119,B12,B121,B122,B123,B124,B126,B130,B131,B132,B134,B137,B138,B140,B18,B19,B2,B22,B23,B26,B27,B3,B30,B31,B32,B35,B39,B4,B41,B42,B43,B46,B49,B52,B56,B6,B60,B64,B67,B69,B70,B71,B74,B75,B79,B80,B81,B82,B83,B85,B89,B9,B91,B95,B96,B98,B99,C1,C10,C12,C13,C14,C17,C18,C19,C2,C20,C21,C23,C25,C27,C29,C3,C38,C39,C4,C41,C42,C44,C45,C47,C49,C5,C53,C55,C58,C59,C6,C61,C63,C64,C66,C67,C7,C74,C79,C80,C83,C86,D1,D10,D2,D4,D6,D7,D8
`Chr1:75801403`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr1:75801533`	`A`	`AC`	1bp_insertion	frameshift_variant	4	B2,B27,C50,C79
`Chr1:75801533`	`A`	`AC`	1bp_insertion	CDS_variant	4	B2,B27,C50,C79
`Chr1:75801583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr1:75801888`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B4,B46,B67,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789450.1

863 aa

432

863

zf-C3HC4_3

PF13920 zf-C3HC4_3 808-855 aa

XP_057789451.1

863 aa

432

863

zf-C3HC4_3

PF13920 zf-C3HC4_3 808-855 aa

XP_057789452.1

862 aa

431

862

zf-C3HC4_3

PF13920 zf-C3HC4_3 807-854 aa

XP_057789453.1

857 aa

428

857

zf-C3HC4_3

PF13920 zf-C3HC4_3 802-849 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789450.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	808	855	8.8e-12	45.3	Zinc finger, C3HC4 type (RING finger)
`XP_057789451.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	808	855	8.8e-12	45.3	Zinc finger, C3HC4 type (RING finger)
`XP_057789452.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	807	854	8.8e-12	45.4	Zinc finger, C3HC4 type (RING finger)
`XP_057789453.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	802	849	8.7e-12	45.4	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057933468.1
GAAAGAAACCCCTTTCGTTTCGCTCCTTATAAATTTCCATGGCCCTTTCTTCTTCACCTCTCTCTCTCTCTCTCTCACGATTTTTTCATACAGTTGCCTTCCTTTCTCTCTCTACCGCTATGCATTAACGCACACATCACACACACTCACACGCAGAAAGTTATACGCTCTGTAGTCGTCTATATTTATATATATATTATATTTGCACACTGATAATTATTACGTGAAAAGTTGGGTTTTCCTTTTATCTTTGCCTATTA...

XM_057933469.1
TCTTCTTCACCTCTCTCTCTCTCTCTCTCACGATTTTTTCATACAGTTGCCTTCCTTTCTCTCTCTACCGCTATGCATTAACGCACACATCACACACACTCACACGCAGAAAGTTATACGCTCTGTAGTCGTCTATATTTATATATATATTATATTTGCACACTGATAATTATTACGTGAAAAGTTGGGTTTTCCTTTTATCTTTGCCTATTACCACACTGCAATCGAAGAGATATAGCTTCAGAGGTGATAGTATGAGT...

CDS

4 records

下载 CDS FASTA

LOC131006278
ATGGACGATGTTCGTCAACAGCTGCAGCAGAAACCTGAGAGCACGGAGAACGACACTCATTCGGAGTTCGAGAGGGGTTTGGAGGAGTTAATGAATGGGCATTATGATGAGTACATGTCCTTTGCTTCTTGTAGCACTCCCCGAACAACTACTACTGAGGAAGAGGAGGATGAAGGGGAACAGCTCATCAGGAGGAGGAGGAGGTCGGATCTCGATGGTGATGACCTGGCAGAATCTTCTGCTGCCCGGAGGCGTCACTC...

Protein

4 records

下载 Protein FASTA

XP_057789450.1
MDDVRQQLQQKPESTENDTHSEFERGLEELMNGHYDEYMSFASCSTPRTTTTEEEEDEGEQLIRRRRRSDLDGDDLAESSAARRRHSRILSRWAARQAQEMMTTMERRNRESELMALAGLHTVSMLDSSFLRESESPTSRHQGNVETLSTQASSILQMWRELEDEHVLNRTRGRVRERLRQQRSVDSNTNASINTEEGREGENQGSLVDATESENDYATWSHDQLGPQNENRDHDSSSREQSPDLGDVERERVRHIVRGW...

XP_057789451.1
MDDVRQQLQQKPESTENDTHSEFERGLEELMNGHYDEYMSFASCSTPRTTTTEEEEDEGEQLIRRRRRSDLDGDDLAESSAARRRHSRILSRWAARQAQEMMTTMERRNRESELMALAGLHTVSMLDSSFLRESESPTSRHQGNVETLSTQASSILQMWRELEDEHVLNRTRGRVRERLRQQRSVDSNTNASINTEEGREGENQGSLVDATESENDYATWSHDQLGPQNENRDHDSSSREQSPDLGDVERERVRHIVRGW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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