Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G006025`

染色体: Chr01 坐标: 75825194-75830311 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G006025`
名称	SmilChr01G006025
描述	probable histone H2B.1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	75825194 - 75830311 / `+`

ID 对照

NCBI Gene ID	`LOC131006283`
GeneID	`131006283`
locus_tag	`-`
NCBI Name	`LOC131006283`
原始查询	`LOC131006283`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable histone H2B.1
产物	probable histone H2B.1
Arabidopsis	`AT3G45980` (HTB9) Histone superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823741] identity=86.6; qcov=0.534; evalue=1.91e-77; confidence=medium
Rice	`Os03g0279000` (H2B1) - identity=84.1; qcov=0.473; evalue=4.08e-68; confidence=medium
GO	GO:0000786 (nucleosome); GO:0003677 (DNA binding); GO:0006334 (nucleosome assembly); GO:0030527 (structural constituent of chromatin); GO:0046982 (protein heterodimerization activity)
KEGG	-
Pfam	PF00125 (Histone); PF00808 (CBFD_NFYB_HMF)
InterPro	-
eggNOG	-
NR	GeneID:131006283

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789460.1`
2	Chromosome	染色体	1.00000	`XP_057789460.1`
3	Nucleoplasm	核质	1.00000	`XP_057789460.1`
4	Nucleolar fibrillar center	Nucleolar fibrillar center	0.60000	`XP_057789460.1`
5	Nucleolus rim	Nucleolus rim	0.60000	`XP_057789460.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:75825293`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B88
`Chr1:75825393`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C20,C51
`Chr1:75825402`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:75825420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B127,B29,B51
`Chr1:75825477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:75825492`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B11,B115,B122,B20
`Chr1:75825504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C34,C53
`Chr1:75825574`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B86,C13
`Chr1:75825588`	`CA`	`C`	1bp_deletion	frameshift_variant	27	A13,B100,B106,B108,B12,B120,B127,B139,B14,B17,B59,B70,B75,B77,B81,B82,B86,B91,C13,C25,C32,C38,C43,C63,C67,C71,C86
`Chr1:75825622`	`C`	`T`	EMS_canonical_SNV	stop_gained	4	B120,B139,B36,B59
`Chr1:75825622`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B120,B139,B36,B59
`Chr1:75825657`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B74,C21,C74

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789460.1

279 aa

140

279

Histone

CBFD_NFYB_HMF

PF00125 Histone 41-117 aa PF00125 Histone 180-255 aa PF00808 CBFD_NFYB_HMF 197-253 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789460.1`	Pfam	`PF00125`	Histone	Domain	41	117	6.6e-42	142.5	Core histone H2A/H2B/H3/H4 domain
`XP_057789460.1`	Pfam	`PF00125`	Histone	Domain	180	255	6.6e-42	142.5	Core histone H2A/H2B/H3/H4 domain
`XP_057789460.1`	Pfam	`PF00808`	CBFD_NFYB_HMF	Domain	197	253	1.1e-11	45.5	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057933477.1
TGACTTCGACATCTATCAAATTCCTCGTTCCTCAGATTCCTTTCAAAACCCACAAAGACTTTCTCTCTTTCGCAAGCAAGCACCACAACGAAACGATGGCAGCCAAAGGAGAGAAGAAGCCCGCCGAGAAGAAACCCGCCGCCGAGAAATCTCCGGCGGAGAAGAAGCCCAAGGCCGGGAAGAAGCTGCCGAAGGAGGCCGGCGCCGCCGCCGGAGACAAGAAGAAGAAGCGCAACAAGAAGAGCGTGGAGACCTACAAG...

CDS

1 records

下载 CDS FASTA

LOC131006283
ATGGCAGCCAAAGGAGAGAAGAAGCCCGCCGAGAAGAAACCCGCCGCCGAGAAATCTCCGGCGGAGAAGAAGCCCAAGGCCGGGAAGAAGCTGCCGAAGGAGGCCGGCGCCGCCGCCGGAGACAAGAAGAAGAAGCGCAACAAGAAGAGCGTGGAGACCTACAAGATCTACATCTTCAAGGTTCTGAAGCAGGTGCACCCCGACATCGGGATCTCGAGCAAGGCCATGGGCATCATGAACAGCTTCATCAACGACATCTT...

Protein

1 records

下载 Protein FASTA

XP_057789460.1
MAAKGEKKPAEKKPAAEKSPAEKKPKAGKKLPKEAGAAAGDKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTRDKKPAEKKPAAEKSPAAEKAPAEKKPKAGKKLPKEGGAADKKKRRAKSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTAVRLVLPGE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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