当前解析结果
SmilChr01G006039| 统一新 Gene ID | SmilChr01G006039 |
|---|---|
| 名称 | SmilChr01G006039 |
| 描述 | malate dehydrogenase [NADP], chloroplastic |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 75886241 - 75890259 / - |
| NCBI Gene ID | LOC131006293 |
|---|---|
| GeneID | 131006293 |
| locus_tag | - |
| NCBI Name | LOC131006293 |
| 原始查询 | LOC131006293 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | malate dehydrogenase [NADP], chloroplastic |
| 产物 | malate dehydrogenase [NADP]%2C chloroplastic |
| Arabidopsis | AT5G58330 (AT5G58330)lactate/malate dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835945] identity=81.5; qcov=0.941; evalue=0; confidence=high |
| Rice | Os08g0562100- identity=88.1; qcov=0.835; evalue=0; confidence=high |
| GO | GO:0006099 (tricarboxylic acid cycle); GO:0006107 (oxaloacetate metabolic process); GO:0006108 (malate metabolic process); GO:0006734 (GO:0006734); GO:0030060 (L-malate dehydrogenase (NAD+) activity); GO:0046554 (L-malate dehydrogenase (NADP+) activity) |
| KEGG | smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00710 (Carbon fixation by Calvin cycle - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00056 (Ldh_1_N); PF02866 (Ldh_1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006293 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057789474.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057789474.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789474.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789474.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789474.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:75886414 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr1:75886743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,C11,C69 |
Chr1:75887097 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B99,C1 |
Chr1:75887155 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr1:75887503 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,C11,C69 |
Chr1:75887853 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:75888010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,C11,C69 |
Chr1:75888033 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr1:75888120 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B4,C30 |
Chr1:75888366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B122 |
Chr1:75889770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B28,B59,C39,C47,C5 |
Chr1:75889793 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B112 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789474.1PF00056
Ldh_1_N 101-248 aa
PF02866
Ldh_1_C 251-421 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789474.1 |
Pfam | PF00056 |
Ldh_1_N | Domain | 101 | 248 | 8.8e-35 | 120.5 | lactate/malate dehydrogenase, NAD binding domain |
XP_057789474.1 |
Pfam | PF02866 |
Ldh_1_C | Domain | 251 | 421 | 8.8e-49 | 166.6 | lactate/malate dehydrogenase, alpha/beta C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。