当前解析结果
SmilChr01G006097| 统一新 Gene ID | SmilChr01G006097 |
|---|---|
| 名称 | SmilChr01G006097 |
| 描述 | DNA excision repair protein ERCC-1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 76441126 - 76445290 / + |
| NCBI Gene ID | LOC131006339 |
|---|---|
| GeneID | 131006339 |
| locus_tag | - |
| NCBI Name | LOC131006339 |
| 原始查询 | LOC131006339 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DNA excision repair protein ERCC-1-like |
| 产物 | DNA excision repair protein ERCC-1-like |
| Arabidopsis | AT3G05210 (ERCC1)nucleotide repair protein [Source:NCBI gene (formerly Entrezgene);Acc:819685] identity=66.5; qcov=0.933; evalue=1.11e-159; confidence=high |
| Rice | Os10g0518900 (ERCC1)- identity=70.7; qcov=0.68; evalue=1.99e-133; confidence=high |
| GO | GO:0000110 (nucleotide-excision repair factor 1 complex); GO:0000710 (meiotic mismatch repair); GO:0003684 (damaged DNA binding); GO:0003697 (single-stranded DNA binding); GO:0005634 (nucleus); GO:0006289 (nucleotide-excision repair); GO:0006312 (mitotic recombination); GO:0070522 (ERCC4-ERCC1 complex); GO:0070914 (UV-damage excision repair) |
| KEGG | smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF03834 (Rad10); PF14520 (HHH_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006339 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057789533.1 |
| 2 | Nucleoplasm | 核质 | 1.00000 | XP_057789533.1 |
| 3 | Nuclear body | 核内小体 | 0.80000 | XP_057789533.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789533.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789533.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:76441708 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:76441733 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B131,B59,B77,C12 |
Chr1:76442029 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B54,C63 |
Chr1:76442080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr1:76444669 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B60,C26 |
Chr1:76444671 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B140,C26 |
Chr1:76444778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,C55 |
Chr1:76444851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A7,B24 |
Chr1:76444904 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B43 |
Chr1:76444906 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B43,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789533.1PF03834
Rad10 103-223 aa
PF14520
HHH_5 242-293 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789533.1 |
Pfam | PF03834 |
Rad10 | Domain | 103 | 223 | 7.1e-48 | 162.1 | Binding domain of DNA repair protein Ercc1 (rad10/Swi10) |
XP_057789533.1 |
Pfam | PF14520 |
HHH_5 | Domain | 242 | 293 | 1e-07 | 33.0 | SAM-like Helix-hairpin-helix tandem |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。