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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G006120

染色体: Chr01 坐标: 76734659-76756527 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G006120
名称SmilChr01G006120
描述receptor-like protein 52
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向76734659 - 76756527 / +

ID 对照

NCBI Gene IDLOC131006355
GeneID131006355
locus_tag-
NCBI NameLOC131006355
原始查询LOC131006355

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述receptor-like protein 52
产物receptor-like protein 52
ArabidopsisAT1G71400 (RLP12)
receptor like protein 12 [Source:NCBI gene (formerly Entrezgene);Acc:843481]
identity=35.2; qcov=0.998; evalue=2.27e-144; confidence=medium
RiceOs12g0211500
-
identity=34.8; qcov=0.899; evalue=8.56e-118; confidence=low
GOGO:0005515 (protein binding)
KEGG-
PfamPF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131006355

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057789534.1
2 Nucleus 细胞核 0.00000 XP_057789534.1
3 Chromosome 染色体 0.00000 XP_057789534.1
4 Centromere 着丝粒 0.00000 XP_057789534.1
5 Chromatin 染色质 0.00000 XP_057789534.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:76734870 G A EMS_canonical_SNV CDS_variant 1 B111
Chr1:76734914 C T EMS_canonical_SNV CDS_variant 4 B44,C41,C42,C54
Chr1:76734919 C T EMS_canonical_SNV stop_gained 7 B16,B72,B90,C40,C42,C62,C77
Chr1:76734935 C T EMS_canonical_SNV CDS_variant 1 C83
Chr1:76734939 C T EMS_canonical_SNV CDS_variant 2 B137,B55
Chr1:76735036 G A EMS_canonical_SNV CDS_variant 1 C69
Chr1:76735046 C T EMS_canonical_SNV CDS_variant 1 B7
Chr1:76735206 C T EMS_canonical_SNV CDS_variant 2 B133,B72
Chr1:76735249 TA T 1bp_deletion frameshift_variant 3 B107,B123,B19
Chr1:76735249 TA T 1bp_deletion CDS_variant 3 B107,B123,B19
Chr1:76735254 T TC 1bp_insertion frameshift_variant 3 B107,B123,B19
Chr1:76735254 T TC 1bp_insertion CDS_variant 3 B107,B123,B19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789534.1
849 aa
N
1
424
849
LRRNT_2
LRR_1
LRR_8
LRR_14
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_14
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
C
PF08263 LRRNT_2 51-91 aa PF00560 LRR_1 170-192 aa PF13855 LRR_8 170-229 aa PF23598 LRR_14 188-296 aa PF00560 LRR_1 194-216 aa PF00560 LRR_1 218-240 aa PF13855 LRR_8 218-277 aa PF00560 LRR_1 242-264 aa PF00560 LRR_1 267-287 aa PF13516 LRR_6 313-327 aa PF00560 LRR_1 314-333 aa PF00560 LRR_1 338-360 aa PF00560 LRR_1 362-384 aa PF23598 LRR_14 375-588 aa PF00560 LRR_1 386-408 aa PF00560 LRR_1 410-432 aa PF00560 LRR_1 433-455 aa PF00560 LRR_1 457-479 aa PF00560 LRR_1 506-528 aa PF13855 LRR_8 506-565 aa PF00560 LRR_1 651-671 aa PF00560 LRR_1 673-694 aa PF00560 LRR_1 698-719 aa
XP_057789535.1
825 aa
N
1
412
825
LRRNT_2
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
C
PF08263 LRRNT_2 51-91 aa PF00560 LRR_1 170-192 aa PF13855 LRR_8 170-229 aa PF00560 LRR_1 194-216 aa PF00560 LRR_1 218-240 aa PF00560 LRR_1 243-263 aa PF13516 LRR_6 289-303 aa PF00560 LRR_1 290-309 aa PF00560 LRR_1 314-336 aa PF00560 LRR_1 338-360 aa PF00560 LRR_1 362-384 aa PF00560 LRR_1 386-408 aa PF00560 LRR_1 409-431 aa PF00560 LRR_1 433-455 aa PF00560 LRR_1 482-504 aa PF13855 LRR_8 482-541 aa PF00560 LRR_1 627-647 aa PF00560 LRR_1 649-670 aa PF00560 LRR_1 674-695 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057789534.1 Pfam PF08263 LRRNT_2 Family 51 91 2.1e-10 41.4 Leucine rich repeat N-terminal domain
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 170 192 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF13855 LRR_8 Repeat 170 229 8.2e-47 157.5 Leucine rich repeat
XP_057789534.1 Pfam PF23598 LRR_14 Repeat 188 296 1.2e-46 159.8 Leucine-rich repeat region
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 194 216 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 218 240 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF13855 LRR_8 Repeat 218 277 8.2e-47 157.5 Leucine rich repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 242 264 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 267 287 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF13516 LRR_6 Repeat 313 327 7.7e-08 32.5 Leucine Rich repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 314 333 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 338 360 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 362 384 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF23598 LRR_14 Repeat 375 588 1.2e-46 159.8 Leucine-rich repeat region
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 386 408 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 410 432 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 433 455 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 457 479 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 506 528 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF13855 LRR_8 Repeat 506 565 8.2e-47 157.5 Leucine rich repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 651 671 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 673 694 3.3e-66 205.5 Leucine Rich Repeat
XP_057789534.1 Pfam PF00560 LRR_1 Repeat 698 719 3.3e-66 205.5 Leucine Rich Repeat
XP_057789535.1 Pfam PF08263 LRRNT_2 Family 51 91 2e-10 41.5 Leucine rich repeat N-terminal domain
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 170 192 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF13855 LRR_8 Repeat 170 229 1.3e-44 150.5 Leucine rich repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 194 216 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 218 240 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 243 263 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF13516 LRR_6 Repeat 289 303 6e-07 29.8 Leucine Rich repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 290 309 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 314 336 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 338 360 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 362 384 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 386 408 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 409 431 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 433 455 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 482 504 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF13855 LRR_8 Repeat 482 541 1.3e-44 150.5 Leucine rich repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 627 647 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 649 670 1.6e-62 194.6 Leucine Rich Repeat
XP_057789535.1 Pfam PF00560 LRR_1 Repeat 674 695 1.6e-62 194.6 Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057933551.1
TGCTTTTGCCTCCAAAAATCACTCTTTATAGTTCCACAATTATTTTCTTCGTCTTTTCCCCATTCACAATTATTTTCTCCGTCTTCGTCTTTCCAATGGGAAAATATTATTTTAGCTTTGAATAAAAGGAAACTCTGCATTTCCTACTTTCATCATTAATCCTTCCCATTTGCCCATCATATCCACACACACACTATATATACATGTATATGGATTTCATAGTTCAATATTCTAAAAAATTACTACTGTCAAAATCAAGC...
XM_057933552.1
TGCTTTTGCCTCCAAAAATCACTCTTTATAGTTCCACAATTATTTTCTTCGTCTTTTCCCCATTCACAATTATTTTCTCCGTCTTCGTCTTTCCAATGGGAAAATATTATTTTAGCTTTGAATAAAAGGAAACTCTGCATTTCCTACTTTCATCATTAATCCTTCCCATTTGCCCATCATATCCACACACACACTATATATACATGTATATGGATTTCATAGTTCAATATTCTAAAAAATTACTACTGTCAAAATCAAGC...

CDS

2 records

下载 CDS FASTA
LOC131006355
ATGTATATGGATTTCATAGTTCAATATTCTAAAAAATTACTACTGTCAAAATCAAGCCAAAAAATGCAAAAATCTCCCCATTTTCTCATCCTTGCGCTACTCTTACCAATCCATTATTTGATGGATTATAACTCAGCCAAAAACGATATCAACACCGATCGTTCTTCACTTCTCGCCTTAAAATCCCAAATCACATTAGATCCTCAAAATATATTGACCCAAAATTGGAGCACTAAAGCCAGTGTTTGTAGTTGGATAGG...
LOC131006355
ATGTATATGGATTTCATAGTTCAATATTCTAAAAAATTACTACTGTCAAAATCAAGCCAAAAAATGCAAAAATCTCCCCATTTTCTCATCCTTGCGCTACTCTTACCAATCCATTATTTGATGGATTATAACTCAGCCAAAAACGATATCAACACCGATCGTTCTTCACTTCTCGCCTTAAAATCCCAAATCACATTAGATCCTCAAAATATATTGACCCAAAATTGGAGCACTAAAGCCAGTGTTTGTAGTTGGATAGG...

Protein

2 records

下载 Protein FASTA
XP_057789534.1
MYMDFIVQYSKKLLLSKSSQKMQKSPHFLILALLLPIHYLMDYNSAKNDINTDRSSLLALKSQITLDPQNILTQNWSTKASVCSWIGVTCDSRYNRVTQLNISYMGLVGTLPREIGNLSFLVSLDANENYFHGSIPPSIFNMSFLEVLELKYNSLSSSLPLDMCTHNLHRLKRLRISYNVLYGEIPSSLGHCSQLEYLSLYNNNFTGFVPTEIGNLTKLQELYLGENKLTGPIPSTIGNLSNLQDLHLSSNKFSGDIPKE...
XP_057789535.1
MYMDFIVQYSKKLLLSKSSQKMQKSPHFLILALLLPIHYLMDYNSAKNDINTDRSSLLALKSQITLDPQNILTQNWSTKASVCSWIGVTCDSRYNRVTQLNISYMGLVGTLPREIGNLSFLVSLDANENYFHGSIPPSIFNMSFLEVLELKYNSLSSSLPLDMCTHNLHRLKRLRISYNVLYGEIPSSLGHCSQLEYLSLYNNNFTGFVPTEIGNLTKLQELYLGENKLTGDIPKEIGYLNYLEVLSMSDNNLSGRLPRQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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