Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G006175`

染色体: Chr01 坐标: 77258619-77261200 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G006175`
名称	SmilChr01G006175
描述	phosphoglucan phosphatase LSF2, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	77258619 - 77261200 / `-`

ID 对照

NCBI Gene ID	`LOC131006402`
GeneID	`131006402`
locus_tag	`-`
NCBI Name	`LOC131006402`
原始查询	`LOC131006402`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	phosphoglucan phosphatase LSF2, chloroplastic
产物	phosphoglucan phosphatase LSF2%2C chloroplastic
Arabidopsis	`AT3G10940` (LSF2) dual specificity protein phosphatase (DsPTP1) family protein [Source:NCBI gene (formerly Entrezgene);Acc:820265] identity=68.7; qcov=0.928; evalue=8.55e-136; confidence=high
Rice	`Os11g0113100` (OsPP117) - identity=74.2; qcov=0.792; evalue=1.18e-124; confidence=high
GO	GO:0005983 (starch catabolic process); GO:0006470 (protein dephosphorylation); GO:0008138 (protein tyrosine/serine/threonine phosphatase activity); GO:0009507 (chloroplast); GO:0019203 (carbohydrate phosphatase activity); GO:2001070 (starch binding)
KEGG	-
Pfam	PF00782 (DSPc)
InterPro	-
eggNOG	-
NR	GeneID:131006402

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057789555.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057789555.1`
3	Nucleus	细胞核	0.00000	`XP_057789555.1`
4	Chromosome	染色体	0.00000	`XP_057789555.1`
5	Centromere	着丝粒	0.00000	`XP_057789555.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789555.1

279 aa

140

279

DSPc

PF00782 DSPc 110-228 aa

XP_057789556.1

279 aa

140

279

DSPc

PF00782 DSPc 110-228 aa

XP_057789557.1

279 aa

140

279

DSPc

PF00782 DSPc 110-228 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789555.1`	Pfam	`PF00782`	DSPc	Domain	110	228	5.8e-14	52.7	Dual specificity phosphatase, catalytic domain
`XP_057789556.1`	Pfam	`PF00782`	DSPc	Domain	110	228	5.8e-14	52.7	Dual specificity phosphatase, catalytic domain
`XP_057789557.1`	Pfam	`PF00782`	DSPc	Domain	110	228	5.8e-14	52.7	Dual specificity phosphatase, catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057933574.1
AAATAAAGTTTCCTATACAGCAGGAGATAAAAGTGGGAGTGTATACAACTATACAAGTTGAAGAAGCGAAGCTACCATAAATAACAAACCGTTCACCACACAAACAAAATCTGACTGTAAAAAATACTATTGACAACAGAGAGAGAGAGAAGCAGAGAAAGAAAAGAAAAGAAAAATGGAAGCTGTTGCAAGCTTGTCTTCACGGCTTCTTTTATCTCCATTTCAATTGCAGAAAACTGGTATCCTCTTCTCTTCTCCAA...

XM_057933573.1
AAATAAAGTTTCCTATACAGCAGGAGATAAAAGTGGGAGTGTATACAACTATACAAGTTGAAGAAGCGAAGCTACCATAAATAACAAACCGTTCACCACACAAACAAAATCTGACTGTAAAAAATACTATTGACAACAGAGAGAGAGAGAAGCAGAGAAAGAAAAGAAAAGAAAAATGGAAGCTGTTGCAAGCTTGTCTTCACGGCTTCTTTTATCTCCATTTCAATTGCAGAAAACTGGTATCCTCTTCTCTTCTCCAA...

CDS

3 records

下载 CDS FASTA

LOC131006402
ATGGAAGCTGTTGCAAGCTTGTCTTCACGGCTTCTTTTATCTCCATTTCAATTGCAGAAAACTGGTATCCTCTTCTCTTCTCCAAAGCAAATCGCAAAGAATTCCCTCAAATCTCCTAAGATTTGTTGCAAGCTACCTGAGAATGACACTGAAGCAACAACCCATTCTACGCAAGGGTTTTCGAGTAGCAAAACAGACGAGTACAACATAGCCATGAAGAAGCTCATGATGAACCCGTATGAATATCATCACGAATTTGG...

Protein

3 records

下载 Protein FASTA

XP_057789555.1
MEAVASLSSRLLLSPFQLQKTGILFSSPKQIAKNSLKSPKICCKLPENDTEATTHSTQGFSSSKTDEYNIAMKKLMMNPYEYHHEFGMNYTLITEDLIVGSQPQKVEDIDHLKEEENVAYILNLQQDSDVEYWGVDLQSIIKRCKEIGIRHMRRPAKDFDPDSLRNGLPKAVSSLEWAIREGKGRAYVHCTAGLGRAPAVAIAYMFWFCNMDLDTAYKTLTSKRPCGPNRQAIRGATYDLAKSDPWKEPLESLPEDAFEN...

XP_057789556.1
MEAVASLSSRLLLSPFQLQKTGILFSSPKQIAKNSLKSPKICCKLPENDTEATTHSTQGFSSSKTDEYNIAMKKLMMNPYEYHHEFGMNYTLITEDLIVGSQPQKVEDIDHLKEEENVAYILNLQQDSDVEYWGVDLQSIIKRCKEIGIRHMRRPAKDFDPDSLRNGLPKAVSSLEWAIREGKGRAYVHCTAGLGRAPAVAIAYMFWFCNMDLDTAYKTLTSKRPCGPNRQAIRGATYDLAKSDPWKEPLESLPEDAFEN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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