当前解析结果
SmilChr01G001339| 统一新 Gene ID | SmilChr01G001339 |
|---|---|
| 名称 | SmilChr01G001339 |
| 描述 | CSC1-like protein At4g35870 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 26626495 - 26629181 / - |
| NCBI Gene ID | LOC131006428 |
|---|---|
| GeneID | 131006428 |
| locus_tag | - |
| NCBI Name | LOC131006428 |
| 原始查询 | LOC131006428 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | CSC1-like protein At4g35870 |
| 产物 | CSC1-like protein At4g35870 |
| Arabidopsis | AT4G35870 (AT4G35870)early-responsive to dehydration stress protein (ERD4) [Source:NCBI gene (formerly Entrezgene);Acc:829741] identity=67.3; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0137400 (OsOSCA4.1)- identity=61.2; qcov=0.986; evalue=0; confidence=high |
| GO | GO:0005227 (calcium-activated cation channel activity); GO:0005886 (plasma membrane) |
| KEGG | - |
| Pfam | PF02714 (RSN1_7TM); PF13967 (RSN1_TM); PF14703 (PHM7_cyt) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006428 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057789580.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057789580.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789580.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789580.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789580.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:26626590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
Chr1:26626745 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,B99 |
Chr1:26626857 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D3 |
Chr1:26627054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B12 |
Chr1:26627147 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A8,B129,C46 |
Chr1:26627195 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr1:26627231 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B77,B78,B99 |
Chr1:26627305 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B7 |
Chr1:26627350 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,B99 |
Chr1:26627879 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A16,B29,B48,C82,D5 |
Chr1:26628045 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A1,B12,B124,B64,C52 |
Chr1:26628235 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C53,C78 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789580.1PF13967
RSN1_TM 64-168 aa
PF14703
PHM7_cyt 200-398 aa
PF02714
RSN1_7TM 409-594 aa
PF02714
RSN1_7TM 675-762 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789580.1 |
Pfam | PF13967 |
RSN1_TM | Family | 64 | 168 | 4.5e-13 | 49.9 | Late exocytosis, associated with Golgi transport |
XP_057789580.1 |
Pfam | PF14703 |
PHM7_cyt | Domain | 200 | 398 | 1.3e-13 | 52.3 | Cytosolic domain of 10TM putative phosphate transporter |
XP_057789580.1 |
Pfam | PF02714 |
RSN1_7TM | Family | 409 | 594 | 2.1e-23 | 83.8 | Calcium-dependent channel, 7TM region, putative phosphate |
XP_057789580.1 |
Pfam | PF02714 |
RSN1_7TM | Family | 675 | 762 | 2.1e-23 | 83.8 | Calcium-dependent channel, 7TM region, putative phosphate |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。