Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr01G000076`

Chromosome: Chr01 Coordinates: 1330362-1331297 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr01G000076`
Name	SmilChr01G000076
Description	uncharacterized SmilChr01G000076
Chromosome / SeqID	Chr01 / NC_080387.1
Coordinates and Strand	1330362 - 1331297 / `+`

ID Mapping

NCBI Gene ID	`LOC131006462`
GeneID	`131006462`
locus_tag	`-`
NCBI Name	`LOC131006462`
Original query	`LOC131006462`

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Functional Annotation

Source	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	confidence=no_hit
Product	confidence=no_hit
Arabidopsis	`-` -
Rice	`-` -
GO	-
KEGG	-
Pfam	PF03732 (PEG10_N-capsid)
InterPro	-
eggNOG	-
NR	GeneID:131006462

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057789602.1`
2	Nucleus	细胞核	0.60000	`XP_057789602.1`
3	Cytosol	细胞质基质	0.20000	`XP_057789602.1`
4	Chromosome	染色体	0.00000	`XP_057789602.1`
5	Centromere	着丝粒	0.00000	`XP_057789602.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr1:1330377`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B11,C27,C41
`Chr1:1330442`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B11,C2,C27,C41,C8
`Chr1:1330443`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B11,C27,C41
`Chr1:1330456`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B40,C29,D6
`Chr1:1330468`	`C`	`CA`	1bp_insertion	frameshift_variant	1	B50
`Chr1:1330468`	`C`	`CA`	1bp_insertion	CDS_variant	1	B50
`Chr1:1330473`	`ACC`	`A`	2bp_deletion	frameshift_variant	1	B50
`Chr1:1330473`	`ACC`	`A`	2bp_deletion	CDS_variant	1	B50
`Chr1:1330478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:1330553`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,C14
`Chr1:1330617`	`C`	`T`	EMS_canonical_SNV	stop_gained	23	A11,A5,B108,B11,B132,B136,B49,B54,B62,B76,B84,B99,C1,C2,C25,C27,C40,C41,C43,C47,C5,C75,C8
`Chr1:1330629`	`C`	`T`	EMS_canonical_SNV	stop_gained	18	A11,A5,B108,B132,B136,B49,B54,B62,B76,B84,B99,C1,C25,C40,C43,C47,C5,C75

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057789602.1

265 aa

132

265

PEG10_N-capsid

PF03732 PEG10_N-capsid 4-69 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057789602.1`	Pfam	`PF03732`	PEG10_N-capsid	Domain	4	69	1.8e-10	41.7	Retrotransposon-derived protein PEG10, N-terminal capsid-like domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XM_057933619.1
ATGTTGGATTACACTGGAAAAGAGGATCATGAAGCCCACATGGCCCGATTCGAAAGTCTTATGACACTACACCAGTACAACGAGGGTATTCGCTGCAGACTTTTCTCAACAACCCTGTCAGGACTGGCGCAAAAATGGTTTTACAAATTGGACCCAGGGTCCATCCATAACTTCAACGAGCTTTATGATGTGTTCATGCATCAATTCTCCAGTTCCAATAGAGCAGAGAAAACAACCATGTCTTTAATGGACATACAACA...

CDS

1 records

Download CDS FASTA

LOC131006462
ATGTTGGATTACACTGGAAAAGAGGATCATGAAGCCCACATGGCCCGATTCGAAAGTCTTATGACACTACACCAGTACAACGAGGGTATTCGCTGCAGACTTTTCTCAACAACCCTGTCAGGACTGGCGCAAAAATGGTTTTACAAATTGGACCCAGGGTCCATCCATAACTTCAACGAGCTTTATGATGTGTTCATGCATCAATTCTCCAGTTCCAATAGAGCAGAGAAAACAACCATGTCTTTAATGGACATACAACA...

Protein

1 records

Download Protein FASTA

XP_057789602.1
MLDYTGKEDHEAHMARFESLMTLHQYNEGIRCRLFSTTLSGLAQKWFYKLDPGSIHNFNELYDVFMHQFSSSNRAEKTTMSLMDIQQEPQETLSEYAARFNMAALELEESKAAGKADAERNMAKKTGKMEERNENRYPDKPCVRAPPPRGPTMYNINTKQEHLPKAGERKTEDVEHRPLIRGRTKDSEEDVNHRSLGFTMYTPLNQSQEDIFHTIKNYRWFYPPRFYNEGPSQLGPNSLLCEFHSQLGHTTEGCSHLKNK...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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