当前解析结果
SmilChr01G000379| 统一新 Gene ID | SmilChr01G000379 |
|---|---|
| 名称 | SmilChr01G000379 |
| 描述 | cytochrome P450 98A2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 7806846 - 7810280 / - |
| NCBI Gene ID | LOC131006470 |
|---|---|
| GeneID | 131006470 |
| locus_tag | - |
| NCBI Name | LOC131006470 |
| 原始查询 | LOC131006470 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 98A2-like |
| 产物 | cytochrome P450 98A2-like |
| Arabidopsis | AT2G40890 (CYP98A3)cytochrome P450, family 98, subfamily A, polypeptide 3 [Source:NCBI gene (formerly Entrezgene);Acc:818686] identity=78.6; qcov=0.986; evalue=0; confidence=high |
| Rice | Os05g0494000 (OsC3'H1)- identity=66.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00945 (Stilbenoid, diarylheptanoid and gingerol biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006470 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057789610.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057789610.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789610.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789610.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789610.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:7807102 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B126,B9,B95,C44 |
Chr1:7807161 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,C5 |
Chr1:7807247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr1:7807442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,C16,D7 |
Chr1:7807589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A3,B2,B99,C16,D7 |
Chr1:7808023 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr1:7809648 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C3,D8 |
Chr1:7809907 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C8 |
Chr1:7809950 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr1:7809959 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B15,D1 |
Chr1:7809961 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr1:7809969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B14,B17,B72,B89,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789610.1PF00067
p450 32-485 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789610.1 |
Pfam | PF00067 |
p450 | Domain | 32 | 485 | 4.3e-104 | 349.6 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。