Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000415`

染色体: Chr01 坐标: 8385195-8388526 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000415`
名称	SmilChr01G000415
描述	adenine DNA glycosylase-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	8385195 - 8388526 / `+`

ID 对照

NCBI Gene ID	`LOC131006497`
GeneID	`131006497`
locus_tag	`-`
NCBI Name	`LOC131006497`
原始查询	`LOC131006497`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	adenine DNA glycosylase-like
产物	adenine DNA glycosylase-like
Arabidopsis	`AT4G12740` (AT4G12740) HhH-GPD base excision DNA repair family protein [Source:NCBI gene (formerly Entrezgene);Acc:826886] identity=58.7; qcov=0.872; evalue=3.06e-176; confidence=high
Rice	`Os12g0211400` - identity=57.5; qcov=0.852; evalue=8.92e-165; confidence=high
GO	GO:0000701 (purine-specific mismatch base pair DNA N-glycosylase activity); GO:0005634 (nucleus); GO:0006284 (base-excision repair); GO:0006298 (mismatch repair); GO:0032357 (oxidized purine DNA binding); GO:0034039 (8-oxo-7,8-dihydroguanine DNA N-glycosylase activity); GO:0035485 (adenine/guanine mispair binding)
KEGG	smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage))
Pfam	PF00730 (HhH-GPD); PF14815 (NUDIX_4)
InterPro	-
eggNOG	-
NR	GeneID:131006497

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057789628.1`
2	Chloroplast	叶绿体	0.80000	`XP_057789628.1`
3	Nucleus	细胞核	0.00000	`XP_057789628.1`
4	Chromosome	染色体	0.00000	`XP_057789628.1`
5	Centromere	着丝粒	0.00000	`XP_057789628.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:8385236`	`TC`	`T`	1bp_deletion	frameshift_variant	7	A18,A21,A24,B104,B94,C48,D5
`Chr1:8385240`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B31,C35,C46
`Chr1:8385265`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B15,D1
`Chr1:8385562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr1:8385639`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B126,B54,B9,C1,C44
`Chr1:8385640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:8386467`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr1:8387107`	`TCG`	`T`	2bp_deletion	frameshift_variant	1	C36
`Chr1:8387107`	`TCG`	`T`	2bp_deletion	CDS_variant	1	C36
`Chr1:8387111`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr1:8387214`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,B138
`Chr1:8388024`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789628.1

494 aa

247

494

HhH-GPD

NUDIX_4

PF00730 HhH-GPD 115-248 aa PF14815 NUDIX_4 331-458 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789628.1`	Pfam	`PF00730`	HhH-GPD	Domain	115	248	9e-25	87.8	HhH-GPD superfamily base excision DNA repair protein
`XP_057789628.1`	Pfam	`PF14815`	NUDIX_4	Domain	331	458	3.7e-15	56.5	NUDIX domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009095553.1
TAGAAATTTGATTGTAGCAATGATTACCTCAGACTTGAAAATCAACTATTTAGCGGGAAAATTACATTCTCTACTCTTGCCTCCCACTCTCCCCATTCGCCTTCCTCACCACTCGCCGGTAGCCGCCGCCGCCGCACTCACGATGAAGAGATGCCGGCAATCAAAATCCGTAGCAAAAGAGGCATTCGATGTTGTTGACTTAGAAGATATCGGCTTCAGCAGAAACGATATTGAAGAAATCAGGGCTTCTCTGCTACAAT...

XM_057933645.1
TAGAAATTTGATTGTAGCAATGATTACCTCAGACTTGAAAATCAACTATTTAGCGGGAAAATTACATTCTCTACTCTTGCCTCCCACTCTCCCCATTCGCCTTCCTCACCACTCGCCGGTAGCCGCCGCCGCCGCACTCACGATGAAGAGATGCCGGCAATCAAAATCCGTAGCAAAAGAGGCATTCGATGTTGTTGACTTAGAAGATATCGGCTTCAGCAGAAACGATATTGAAGAAATCAGGGCTTCTCTGCTACAAT...

CDS

1 records

下载 CDS FASTA

LOC131006497
ATGATTACCTCAGACTTGAAAATCAACTATTTAGCGGGAAAATTACATTCTCTACTCTTGCCTCCCACTCTCCCCATTCGCCTTCCTCACCACTCGCCGGTAGCCGCCGCCGCCGCACTCACGATGAAGAGATGCCGGCAATCAAAATCCGTAGCAAAAGAGGCATTCGATGTTGTTGACTTAGAAGATATCGGCTTCAGCAGAAACGATATTGAAGAAATCAGGGCTTCTCTGCTACAATGGTACGACGAGAATCGAAG...

Protein

1 records

下载 Protein FASTA

XP_057789628.1
MITSDLKINYLAGKLHSLLLPPTLPIRLPHHSPVAAAAALTMKRCRQSKSVAKEAFDVVDLEDIGFSRNDIEEIRASLLQWYDENRRDLPWRRISSKESKGGVEQRERKAYAVWVSEVMLQQTRVQTVIDYFNRWMEKWPTIHHLAQATIEEVNEMWAGLGYYRRARFLLEGAQMIVESGGEFPNTASSLQMVKGIGNYTAGAIASIAFDEAVPVVDGNVVRVVTRLKSISANPKDSKTVKDIWELARKLVDPLRPGDFN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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