Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000480`

染色体: Chr01 坐标: 9876906-9879740 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000480`
名称	SmilChr01G000480
描述	uncharacterized SmilChr01G000480
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	9876906 - 9879740 / `+`

ID 对照

NCBI Gene ID	`LOC131006534`
GeneID	`131006534`
locus_tag	`-`
NCBI Name	`LOC131006534`
原始查询	`LOC131006534`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os11g0118600; species=rice; confidence=high
产物	hit=Os11g0118600; species=rice; confidence=high
Arabidopsis	`AT3G08600` (AT3G08600) transmembrane protein, putative (DUF1191) [Source:NCBI gene (formerly Entrezgene);Acc:820007] identity=50.4; qcov=0.925; evalue=1.16e-72; confidence=high
Rice	`Os11g0118600` - identity=50.5; qcov=1.01; evalue=8.57e-98; confidence=high
GO	GO:0016020 (membrane)
KEGG	-
Pfam	PF06697 (DUF1191)
InterPro	-
eggNOG	-
NR	GeneID:131006534

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057789670.1`
2	Nucleus	细胞核	0.00000	`XP_057789670.1`
3	Chromosome	染色体	0.00000	`XP_057789670.1`
4	Centromere	着丝粒	0.00000	`XP_057789670.1`
5	Chromatin	染色质	0.00000	`XP_057789670.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:9877291`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B109,B120,B140,C24,C25
`Chr1:9877402`	`AT`	`A`	1bp_deletion	frameshift_variant	12	A18,B106,B124,B138,B33,B46,C1,C37,C48,C57,C60,C71
`Chr1:9877416`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C1,C17
`Chr1:9877441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B79
`Chr1:9877442`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B95,C12,C31,C53
`Chr1:9877448`	`AG`	`A`	1bp_deletion	frameshift_variant	31	A11,A20,B10,B112,B114,B122,B16,B44,B48,B58,B62,B65,B69,B71,B73,B74,B77,B79,B93,C12,C14,C20,C28,C31,C35,C37,C52,C53,C76,C80,D7
`Chr1:9877550`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr1:9877569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:9877583`	`TA`	`T`	1bp_deletion	frameshift_variant	6	A11,B48,B62,C31,C38,C53
`Chr1:9877590`	`G`	`GA`	1bp_insertion	frameshift_variant	3	B106,C60,C71
`Chr1:9877590`	`G`	`GA`	1bp_insertion	CDS_variant	3	B106,C60,C71
`Chr1:9877596`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,A23,B130

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789670.1

305 aa

152

305

DUF1191

PF06697 DUF1191 26-202 aa

XP_057789671.1

305 aa

152

305

DUF1191

PF06697 DUF1191 26-202 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789670.1`	Pfam	`PF06697`	DUF1191	Family	26	202	2.4e-70	236.7	Protein of unknown function (DUF1191)
`XP_057789671.1`	Pfam	`PF06697`	DUF1191	Family	26	202	2.4e-70	236.7	Protein of unknown function (DUF1191)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933687.1
CTTTCCAGTTGTACTCTTTTTTTTTTTTTTATCTGCTAAATATATTAAATTTCTTCCCTTTTTTCAGCTTCTGCGAACTTGTTGCCTTGATTCCTCATGCCAGAATCCCTTGTATTTTTCCCACAGATCCTCTTATCTTAGGCAAGTTCGCGATCCATTTCTTTGCTGCTGCTACTGCATCTCTGTAGCTAGATTTGATTTTCCACGGATCGGATTTTTCAACAGGAAAAGGGGATATGGCGGCCATTAAAGCACTCTCG...

XM_057933688.1
CTTTCCAGTTGTACTCTTTTTTTTTTTTTTATCTGCTAAATATATTAAATTTCTTCCCTTTTTTCAGCTTCTGCGAACTTGTTGCCTTGATTCCTCATGCCAGAATCCCTTGTATTTTTCCCACAGATCCTCTTATCTTAGGCAAGTTCGCGATCCATTTCTTTGCTGCTGCTACTGCATCTCTGTAGCTAGATTTGATTTTCCACGGATCGGATTTTTCAACAGGAAAAGGGGATATGGCGGCCATTAAAGCACTCTCG...

CDS

2 records

下载 CDS FASTA

LOC131006534
ATGCTTCTAGCATATTTCTGCACAATTCTTCTGTTCCAAGCGGCGATTGCTCAACCGAGATCGGAGCTCTCAGCTATCGCGCTCGATTCTCTGCTCCAGGACTACGCGTTTAGGGCTTTAGTCAGGCCGAAGACCGGCATTGTCTACGACGGCAATGTGCCGTCCAACTTGACCGGCATCGCCGTGGCGGCGCTGCGGCTCAGGAGCGGCAGCCTGCGGCGGAAGGGGGCGGCGTACAAAGAGTTTCGCCTCCCAGTAGG...

Protein

2 records

下载 Protein FASTA

XP_057789670.1
MLLAYFCTILLFQAAIAQPRSELSAIALDSLLQDYAFRALVRPKTGIVYDGNVPSNLTGIAVAALRLRSGSLRRKGAAYKEFRLPVGVTAQPYVERLVLVYHNLGNWSSSYYSLPGQTFLAPVLGLLAYDASNLSAKNLSELDIMAAADRISVTFPAVRAGPGGLPPKCVHFALDGSVEFDNVVNGTTCLTADQGHYSIVVETVAAPAPAPSGGAPPSIPAKGKGKGKKRIWIIVAAVLGGVALVLALAVLFAYVRRCRR...

XP_057789671.1
MLLAYFCTILLFQAAIAQPRSELSAIALDSLLQDYAFRALVRPKTGIVYDGNVPSNLTGIAVAALRLRSGSLRRKGAAYKEFRLPVGVTAQPYVERLVLVYHNLGNWSSSYYSLPGQTFLAPVLGLLAYDASNLSAKNLSELDIMAAADRISVTFPAVRAGPGGLPPKCVHFALDGSVEFDNVVNGTTCLTADQGHYSIVVETVAAPAPAPSGGAPPSIPAKGKGKGKKRIWIIVAAVLGGVALVLALAVLFAYVRRCRR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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