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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G000533

染色体: Chr01 坐标: 10857613-10861192 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G000533
名称SmilChr01G000533
描述pyrophosphate-energized vacuolar membrane proton pump-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向10857613 - 10861192 / -

ID 对照

NCBI Gene IDLOC131006582
GeneID131006582
locus_tag-
NCBI NameLOC131006582
原始查询LOC131006582

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pyrophosphate-energized vacuolar membrane proton pump-like
产物pyrophosphate-energized vacuolar membrane proton pump-like
ArabidopsisAT1G15690 (AVP1)
Inorganic H pyrophosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838138]
identity=75; qcov=0.504; evalue=2.72e-22; confidence=medium
RiceOs06g0178900 (OVP2)
-
identity=76.7; qcov=0.504; evalue=1.57e-22; confidence=medium
GOGO:0004427 (inorganic diphosphate phosphatase activity); GO:0009678 (diphosphate hydrolysis-driven proton transmembrane transporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport)
KEGG-
PfamPF03030 (H_PPase); PF16203 (ERCC3_RAD25_C)
InterPro-
eggNOG-
NRGeneID:131006582

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057789712.1
2 Chloroplast 叶绿体 0.80000 XP_057789725.1
3 Mitochondrion membrane 线粒体膜 0.80000 XP_057789720.1
4 Secreted 分泌到胞外 0.60000 XP_057789715.1
5 Cytoplasm 细胞质 0.60000 XP_057789716.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:10859452 G A EMS_canonical_SNV CDS_variant 1 B45
Chr1:10859473 G A EMS_canonical_SNV CDS_variant 2 B106,B45
Chr1:10859496 C T EMS_canonical_SNV CDS_variant 1 B114
Chr1:10859535 C T EMS_canonical_SNV CDS_variant 1 D10
Chr1:10859571 C T EMS_canonical_SNV CDS_variant 5 A8,B121,B132,C16,C78
Chr1:10859671 G A EMS_canonical_SNV CDS_variant 5 B10,C10,C29,C82,C84
Chr1:10859672 G A EMS_canonical_SNV CDS_variant 2 C16,C62
Chr1:10859698 G A EMS_canonical_SNV CDS_variant 5 A10,A4,B118,B12,B45
Chr1:10859709 C T EMS_canonical_SNV CDS_variant 3 B124,C30,C65
Chr1:10859726 G A EMS_canonical_SNV CDS_variant 5 B134,B74,C49,C71,D1
Chr1:10859752 C T EMS_canonical_SNV stop_gained 2 B124,C65
Chr1:10859752 C T EMS_canonical_SNV CDS_variant 2 B124,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789707.1
170 aa
N
1
85
170
H_PPase
C
PF03030 H_PPase 7-129 aa
XP_057789708.1
169 aa
N
1
84
169
H_PPase
C
PF03030 H_PPase 7-128 aa
XP_057789709.1
169 aa
N
1
84
169
H_PPase
C
PF03030 H_PPase 7-128 aa
XP_057789710.1
161 aa
N
1
80
161
H_PPase
C
PF03030 H_PPase 7-46 aa
XP_057789711.1
160 aa
N
1
80
160
H_PPase
C
PF03030 H_PPase 13-119 aa
XP_057789712.1
159 aa
N
1
80
159
H_PPase
C
PF03030 H_PPase 13-118 aa
XP_057789713.1
157 aa
N
1
78
157
H_PPase
C
PF03030 H_PPase 7-46 aa
XP_057789714.1
154 aa
N
1
77
154
H_PPase
C
PF03030 H_PPase 7-46 aa
XP_057789715.1
144 aa
N
1
72
144
H_PPase
C
PF03030 H_PPase 7-107 aa
XP_057789716.1
143 aa
N
1
72
143
ERCC3_RAD25_C
C
PF16203 ERCC3_RAD25_C 10-57 aa
XP_057789717.1
142 aa
N
1
71
142
ERCC3_RAD25_C
C
PF16203 ERCC3_RAD25_C 10-44 aa
XP_057789719.1
139 aa
N
1
70
139
ERCC3_RAD25_C
C
PF16203 ERCC3_RAD25_C 10-57 aa
XP_057789720.1
138 aa
N
1
69
138
ERCC3_RAD25_C
C
PF16203 ERCC3_RAD25_C 10-44 aa
XP_057789721.1
136 aa
N
1
68
136
ERCC3_RAD25_C
C
PF16203 ERCC3_RAD25_C 10-58 aa
XP_057789722.1
135 aa
N
1
68
135
ERCC3_RAD25_C
C
PF16203 ERCC3_RAD25_C 10-45 aa
XP_057789723.1
133 aa
N
1
66
133
ERCC3_RAD25_C
C
PF16203 ERCC3_RAD25_C 1-47 aa
XP_057789724.1
132 aa
N
1
66
132
ERCC3_RAD25_C
C
PF16203 ERCC3_RAD25_C 1-35 aa
XP_057789725.1
127 aa
N
1
64
127
H_PPase
C
PF03030 H_PPase 7-93 aa
XP_057789726.1
126 aa
N
1
63
126
H_PPase
C
PF03030 H_PPase 7-92 aa
XP_057789727.1
120 aa
N
1
60
120
H_PPase
C
PF03030 H_PPase 7-80 aa
XP_057789728.1
119 aa
N
1
60
119
H_PPase
C
PF03030 H_PPase 7-79 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057789707.1 Pfam PF03030 H_PPase Family 7 129 3.9e-33 115.7 Inorganic H+ pyrophosphatase
XP_057789708.1 Pfam PF03030 H_PPase Family 7 128 4.2e-33 115.6 Inorganic H+ pyrophosphatase
XP_057789709.1 Pfam PF03030 H_PPase Family 7 128 4e-31 109.1 Inorganic H+ pyrophosphatase
XP_057789710.1 Pfam PF03030 H_PPase Family 7 46 2.6e-09 37.0 Inorganic H+ pyrophosphatase
XP_057789711.1 Pfam PF03030 H_PPase Family 13 119 2.1e-32 113.4 Inorganic H+ pyrophosphatase
XP_057789712.1 Pfam PF03030 H_PPase Family 13 118 2.1e-30 106.7 Inorganic H+ pyrophosphatase
XP_057789713.1 Pfam PF03030 H_PPase Family 7 46 2.4e-09 37.2 Inorganic H+ pyrophosphatase
XP_057789714.1 Pfam PF03030 H_PPase Family 7 46 2.2e-09 37.3 Inorganic H+ pyrophosphatase
XP_057789715.1 Pfam PF03030 H_PPase Family 7 107 4.6e-34 118.8 Inorganic H+ pyrophosphatase
XP_057789716.1 Pfam PF16203 ERCC3_RAD25_C Domain 10 57 1.3e-09 38.4 ERCC3/RAD25/XPB C-terminal helicase
XP_057789717.1 Pfam PF16203 ERCC3_RAD25_C Domain 10 44 2.1e-09 37.8 ERCC3/RAD25/XPB C-terminal helicase
XP_057789719.1 Pfam PF16203 ERCC3_RAD25_C Domain 10 57 1.3e-09 38.4 ERCC3/RAD25/XPB C-terminal helicase
XP_057789720.1 Pfam PF16203 ERCC3_RAD25_C Domain 10 44 2.1e-09 37.8 ERCC3/RAD25/XPB C-terminal helicase
XP_057789721.1 Pfam PF16203 ERCC3_RAD25_C Domain 10 58 1.1e-09 38.7 ERCC3/RAD25/XPB C-terminal helicase
XP_057789722.1 Pfam PF16203 ERCC3_RAD25_C Domain 10 45 1.7e-09 38.1 ERCC3/RAD25/XPB C-terminal helicase
XP_057789723.1 Pfam PF16203 ERCC3_RAD25_C Domain 1 47 4.5e-09 36.7 ERCC3/RAD25/XPB C-terminal helicase
XP_057789724.1 Pfam PF16203 ERCC3_RAD25_C Domain 1 35 6.9e-09 36.1 ERCC3/RAD25/XPB C-terminal helicase
XP_057789725.1 Pfam PF03030 H_PPase Family 7 93 1.2e-29 104.3 Inorganic H+ pyrophosphatase
XP_057789726.1 Pfam PF03030 H_PPase Family 7 92 1.2e-27 97.6 Inorganic H+ pyrophosphatase
XP_057789727.1 Pfam PF03030 H_PPase Family 7 80 3.5e-27 96.1 Inorganic H+ pyrophosphatase
XP_057789728.1 Pfam PF03030 H_PPase Family 7 79 3.6e-25 89.4 Inorganic H+ pyrophosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

34 records

下载 cDNA FASTA
XR_009095611.1
TCCCCTCTCGACTCCGCCGCCGGCGCCGCTGCCCCGCGCAGGCCCGTCGCCGCCCACCCTCGCTGCTGCCCCGCGCCCACCCACCCTCGCTGCTGCCTCGCGCCCGCCCACCCTTGTCGCTGCATCGCACCGCTGCCGCCTCGGCGCTTTCCTCCTCCGCGCAGTCGCCACTCTGCCTGCCGCCTCGGCGCTTTCCCACGGCTCAAAAACCCTAGCCGTCGTTCTGCCTGCGACGGCCGTTTTCGCCGCTCAGCCTGCAG...
XR_009095609.1
TCCCCTCTCGACTCCGCCGCCGGCGCCGCTGCCCCGCGCAGGCCCGTCGCCGCCCACCCTCGCTGCTGCCCCGCGCCCACCCACCCTCGCTGCTGCCTCGCGCCCGCCCACCCTTGTCGCTGCATCGCACCGCTGCCGCCTCGGCGCTTTCCTCCTCCGCGCAGTCGCCACTCTGCCTGCCGCCTCGGCGCTTTCCCACGGCTCAAAAACCCTAGCCGTCGTTCTGCCTGCGACGGCCGTTTTCGCCGCTCAGCCTGCAG...

CDS

22 records

下载 CDS FASTA
LOC131006582
ATGAAGCCTCAGGACACGGTGGCAGGAGGAATGTATTATTCAACAAAAAGGCAGCAGTTTTTGATCGATCAAGGTGCTGATCTTGTTGGAAAGGTTGAAAGAAACATCCCTGAAGATGACCCCAGAAATCCGGTTGTCATTGCTGACAATGTTGGTGATAATGTCGGAGATATTGCTGGAATGGGATCTGATCTTTTTGGTTCATATGCCGAATCCTCTTGTGCTGCTCTTGTTATCGTACTAACTTATTTTGATCTACC...
LOC131006582
ATGAAGCCTCAGGACACGGTGGCAGGAGGAATGTATTATTCAACAAAAAGGCAGCAGTTTTTGATCGATCAAGGTGCTGATCTTGTTGGAAAGGTTGAAAGAAACATCCCTGAAGATGACCCCAGAAATCCGGTCATTGCTGACAATGTTGGTGATAATGTCGGAGATATTGCTGGAATGGGATCTGATCTTTTTGTTTTAGCAGCAGCCGGATTAATTGCTTGTCATGCCTCAAAAAGGTTCCCTGATGAACAGTGGGA...

Protein

22 records

下载 Protein FASTA
XP_057789707.1
MKPQDTVAGGMYYSTKRQQFLIDQGADLVGKVERNIPEDDPRNPVVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVIVLTYFDLPSHNNYFCLLISVLALLWQRCNSNKIKFSAVLAAAGLIACHASKRFPDEQWEKYAVVTLMDCRSALDPVLSSHHISASLIKNDF
XP_057789708.1
MKPQDTVAGGMYYSTKRQQFLIDQGADLVGKVERNIPEDDPRNPVVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVIVLTYFDLPSHNNYFCLLISVLALLWQRCNSNKIKFSAVLAAAGLIACHASKRFPDEQWEKYAVVTLMDCRSALDPVLSSHHILRFQSPLF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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