Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000569`

染色体: Chr01 坐标: 11794219-11803864 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000569`
名称	SmilChr01G000569
描述	probable LRR receptor-like serine/threonine-protein kinase At1g06840
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	11794219 - 11803864 / `-`

ID 对照

NCBI Gene ID	`LOC131006611`
GeneID	`131006611`
locus_tag	`-`
NCBI Name	`LOC131006611`
原始查询	`LOC131006611`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At1g06840
产物	probable LRR receptor-like serine/threonine-protein kinase At1g06840
Arabidopsis	`AT1G06840` (AT1G06840) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:837196] identity=62.9; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0960400` (P0401G10.25-1) - identity=59.5; qcov=1.02; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131006611

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057789769.1`
2	Nucleus	细胞核	0.00000	`XP_057789769.1`
3	Chromosome	染色体	0.00000	`XP_057789769.1`
4	Centromere	着丝粒	0.00000	`XP_057789769.1`
5	Chromatin	染色质	0.00000	`XP_057789769.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:11794962`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B51,B56,B59,B96
`Chr1:11797181`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:11797585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A4,B121,B47,B64
`Chr1:11797632`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr1:11798122`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C69
`Chr1:11798630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:11800481`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:11800697`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C25
`Chr1:11800741`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789769.1

977 aa

488

977

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 57-95 aa PF00560 LRR_1 154-176 aa PF00560 LRR_1 204-224 aa PF13855 LRR_8 297-354 aa PF00560 LRR_1 321-343 aa PF00560 LRR_1 346-366 aa PF00069 Pkinase 648-913 aa PF07714 PK_Tyr_Ser-Thr 648-915 aa

XP_057789770.1

977 aa

488

977

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

XP_057789771.1

976 aa

488

976

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 56-94 aa PF00560 LRR_1 153-175 aa PF00560 LRR_1 203-223 aa PF13855 LRR_8 296-353 aa PF00560 LRR_1 320-342 aa PF00560 LRR_1 345-365 aa PF00069 Pkinase 647-912 aa PF07714 PK_Tyr_Ser-Thr 647-914 aa

XP_057789772.1

976 aa

488

976

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

XP_057789773.1

954 aa

477

954

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 34-72 aa PF00560 LRR_1 131-153 aa PF00560 LRR_1 181-201 aa PF13855 LRR_8 274-331 aa PF00560 LRR_1 298-320 aa PF00560 LRR_1 323-343 aa PF00069 Pkinase 625-890 aa PF07714 PK_Tyr_Ser-Thr 625-892 aa

XP_057789774.1

954 aa

477

954

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

XP_057789775.1

954 aa

477

954

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

XP_057789776.1

847 aa

424

847

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF00560 LRR_1 24-46 aa PF00560 LRR_1 74-94 aa PF13855 LRR_8 167-224 aa PF00560 LRR_1 191-213 aa PF00560 LRR_1 216-236 aa PF00069 Pkinase 518-783 aa PF07714 PK_Tyr_Ser-Thr 518-785 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789769.1`	Pfam	`PF08263`	LRRNT_2	Family	57	95	1.3e-10	42.1	Leucine rich repeat N-terminal domain
`XP_057789769.1`	Pfam	`PF00560`	LRR_1	Repeat	154	176	2.1e-16	57.2	Leucine Rich Repeat
`XP_057789769.1`	Pfam	`PF00560`	LRR_1	Repeat	204	224	2.1e-16	57.2	Leucine Rich Repeat
`XP_057789769.1`	Pfam	`PF13855`	LRR_8	Repeat	297	354	1.4e-13	51.0	Leucine rich repeat
`XP_057789769.1`	Pfam	`PF00560`	LRR_1	Repeat	321	343	2.1e-16	57.2	Leucine Rich Repeat
`XP_057789769.1`	Pfam	`PF00560`	LRR_1	Repeat	346	366	2.1e-16	57.2	Leucine Rich Repeat
`XP_057789769.1`	Pfam	`PF00069`	Pkinase	Domain	648	913	1.3e-46	159.9	Protein kinase domain
`XP_057789769.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	648	915	3.7e-42	145.1	Protein tyrosine and serine/threonine kinase
`XP_057789770.1`	Pfam	`PF08263`	LRRNT_2	Family	57	95	1.3e-10	42.1	Leucine rich repeat N-terminal domain
`XP_057789770.1`	Pfam	`PF00560`	LRR_1	Repeat	154	176	2.1e-16	57.2	Leucine Rich Repeat
`XP_057789770.1`	Pfam	`PF00560`	LRR_1	Repeat	204	224	2.1e-16	57.2	Leucine Rich Repeat
`XP_057789770.1`	Pfam	`PF13855`	LRR_8	Repeat	297	354	1.4e-13	51.0	Leucine rich repeat
`XP_057789770.1`	Pfam	`PF00560`	LRR_1	Repeat	321	343	2.1e-16	57.2	Leucine Rich Repeat
`XP_057789770.1`	Pfam	`PF00560`	LRR_1	Repeat	346	366	2.1e-16	57.2	Leucine Rich Repeat
`XP_057789770.1`	Pfam	`PF00069`	Pkinase	Domain	648	913	1.3e-46	159.9	Protein kinase domain
`XP_057789770.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	648	915	3.7e-42	145.1	Protein tyrosine and serine/threonine kinase
`XP_057789771.1`	Pfam	`PF08263`	LRRNT_2	Family	56	94	1.3e-10	42.1	Leucine rich repeat N-terminal domain
`XP_057789771.1`	Pfam	`PF00560`	LRR_1	Repeat	153	175	2e-16	57.3	Leucine Rich Repeat
`XP_057789771.1`	Pfam	`PF00560`	LRR_1	Repeat	203	223	2e-16	57.3	Leucine Rich Repeat
`XP_057789771.1`	Pfam	`PF13855`	LRR_8	Repeat	296	353	1.4e-13	51.1	Leucine rich repeat
`XP_057789771.1`	Pfam	`PF00560`	LRR_1	Repeat	320	342	2e-16	57.3	Leucine Rich Repeat
`XP_057789771.1`	Pfam	`PF00560`	LRR_1	Repeat	345	365	2e-16	57.3	Leucine Rich Repeat
`XP_057789771.1`	Pfam	`PF00069`	Pkinase	Domain	647	912	1.3e-46	159.9	Protein kinase domain
`XP_057789771.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	647	914	3.7e-42	145.1	Protein tyrosine and serine/threonine kinase
`XP_057789772.1`	Pfam	`PF08263`	LRRNT_2	Family	56	94	1.3e-10	42.1	Leucine rich repeat N-terminal domain
`XP_057789772.1`	Pfam	`PF00560`	LRR_1	Repeat	153	175	2e-16	57.3	Leucine Rich Repeat
`XP_057789772.1`	Pfam	`PF00560`	LRR_1	Repeat	203	223	2e-16	57.3	Leucine Rich Repeat
`XP_057789772.1`	Pfam	`PF13855`	LRR_8	Repeat	296	353	1.4e-13	51.1	Leucine rich repeat
`XP_057789772.1`	Pfam	`PF00560`	LRR_1	Repeat	320	342	2e-16	57.3	Leucine Rich Repeat
`XP_057789772.1`	Pfam	`PF00560`	LRR_1	Repeat	345	365	2e-16	57.3	Leucine Rich Repeat
`XP_057789772.1`	Pfam	`PF00069`	Pkinase	Domain	647	912	1.3e-46	159.9	Protein kinase domain
`XP_057789772.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	647	914	3.7e-42	145.1	Protein tyrosine and serine/threonine kinase
`XP_057789773.1`	Pfam	`PF08263`	LRRNT_2	Family	34	72	1.2e-10	42.2	Leucine rich repeat N-terminal domain
`XP_057789773.1`	Pfam	`PF00560`	LRR_1	Repeat	131	153	1.5e-16	57.7	Leucine Rich Repeat
`XP_057789773.1`	Pfam	`PF00560`	LRR_1	Repeat	181	201	1.5e-16	57.7	Leucine Rich Repeat
`XP_057789773.1`	Pfam	`PF13855`	LRR_8	Repeat	274	331	9e-14	51.7	Leucine rich repeat
`XP_057789773.1`	Pfam	`PF00560`	LRR_1	Repeat	298	320	1.5e-16	57.7	Leucine Rich Repeat
`XP_057789773.1`	Pfam	`PF00560`	LRR_1	Repeat	323	343	1.5e-16	57.7	Leucine Rich Repeat
`XP_057789773.1`	Pfam	`PF00069`	Pkinase	Domain	625	890	1.2e-46	159.9	Protein kinase domain
`XP_057789773.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	625	892	3.6e-42	145.2	Protein tyrosine and serine/threonine kinase
`XP_057789774.1`	Pfam	`PF08263`	LRRNT_2	Family	34	72	1.2e-10	42.2	Leucine rich repeat N-terminal domain
`XP_057789774.1`	Pfam	`PF00560`	LRR_1	Repeat	131	153	1.5e-16	57.7	Leucine Rich Repeat
`XP_057789774.1`	Pfam	`PF00560`	LRR_1	Repeat	181	201	1.5e-16	57.7	Leucine Rich Repeat
`XP_057789774.1`	Pfam	`PF13855`	LRR_8	Repeat	274	331	9e-14	51.7	Leucine rich repeat
`XP_057789774.1`	Pfam	`PF00560`	LRR_1	Repeat	298	320	1.5e-16	57.7	Leucine Rich Repeat
`XP_057789774.1`	Pfam	`PF00560`	LRR_1	Repeat	323	343	1.5e-16	57.7	Leucine Rich Repeat
`XP_057789774.1`	Pfam	`PF00069`	Pkinase	Domain	625	890	1.2e-46	159.9	Protein kinase domain
`XP_057789774.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	625	892	3.6e-42	145.2	Protein tyrosine and serine/threonine kinase
`XP_057789775.1`	Pfam	`PF08263`	LRRNT_2	Family	34	72	1.2e-10	42.2	Leucine rich repeat N-terminal domain
`XP_057789775.1`	Pfam	`PF00560`	LRR_1	Repeat	131	153	1.5e-16	57.7	Leucine Rich Repeat
`XP_057789775.1`	Pfam	`PF00560`	LRR_1	Repeat	181	201	1.5e-16	57.7	Leucine Rich Repeat
`XP_057789775.1`	Pfam	`PF13855`	LRR_8	Repeat	274	331	9e-14	51.7	Leucine rich repeat
`XP_057789775.1`	Pfam	`PF00560`	LRR_1	Repeat	298	320	1.5e-16	57.7	Leucine Rich Repeat
`XP_057789775.1`	Pfam	`PF00560`	LRR_1	Repeat	323	343	1.5e-16	57.7	Leucine Rich Repeat
`XP_057789775.1`	Pfam	`PF00069`	Pkinase	Domain	625	890	1.2e-46	159.9	Protein kinase domain
`XP_057789775.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	625	892	3.6e-42	145.2	Protein tyrosine and serine/threonine kinase
`XP_057789776.1`	Pfam	`PF00560`	LRR_1	Repeat	24	46	3e-18	62.7	Leucine Rich Repeat
`XP_057789776.1`	Pfam	`PF00560`	LRR_1	Repeat	74	94	3e-18	62.7	Leucine Rich Repeat
`XP_057789776.1`	Pfam	`PF13855`	LRR_8	Repeat	167	224	2.4e-13	50.3	Leucine rich repeat
`XP_057789776.1`	Pfam	`PF00560`	LRR_1	Repeat	191	213	3e-18	62.7	Leucine Rich Repeat
`XP_057789776.1`	Pfam	`PF00560`	LRR_1	Repeat	216	236	3e-18	62.7	Leucine Rich Repeat
`XP_057789776.1`	Pfam	`PF00069`	Pkinase	Domain	518	783	1e-46	160.2	Protein kinase domain
`XP_057789776.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	518	785	2.9e-42	145.5	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XM_057933789.1
AGCAGCAGCTTGCTAATTACGGCGGTGGATCGCCAATAGCGAACTTTATCCAACCCATGAAAATGATGATATCATGCAAGAGTTAAAACGTCGTTGAGCAACCACAGCAGCTTCACCTCTTCTTCCAAACTCTCAATTAAAAAAATCTGTGTCAATAAATTTAGTAAAGTATTAGAAATGATGTCAGTTGTTCGTGCATACATTTCAACGTTTTCACATTGAACGAAGAATTTAGAAGAAGTAGTTGCTACCGTCGCAAT...

XM_057933787.1
GCTTGCTAATTACGGCGGTGGATCGCCAATAGCGAACTTTATCCAACCCATGAAAATGATGATATCATGCAAGAGTTAAAACGTCGTTGAGCAACCACAGCAGCTTCACCTCTTCTTCCAAACTCTCAATTAAAAAAATCTGTGTCAATAAATTTAGTAAAGTATTAGAAATGATGTCAGTTGTTCGTGCATACATTTCAACGTTTTCACATTGAACGAAGAATTTAGAAGAAGTAGTTGCTACCGTCGCAATCCGTCGC...

CDS

8 records

下载 CDS FASTA

LOC131006611
ATGTCCGTGTCTTTATTGCTGATTGTATTGCTAGCTACTTCTATGTGTTTAGAGAAAAAGCTTGAGATGGTGGTGACTTTTGGGTATGCAAAGTTTGGGAGGATTGTGATTGTATTTTTGTGCTTGGCGTCCGTGCCTATCATCGCAAACACCCAAAGGACGCCTCAGGAAGAAGTCAATGCATTGCAATCCATCAAGAACAGTTTCACTGATCCGTATAGAAATCTTCGCAACTGGAACAGAGGGGATCCATGCACTAC...

Protein

8 records

下载 Protein FASTA

XP_057789769.1
MSVSLLLIVLLATSMCLEKKQLEMVVTFGYAKFGRIVIVFLCLASVPIIANTQRTPQEEVNALQSIKNSFTDPYRNLRNWNRGDPCTTNWTGVICHNLTPTDGYLHITELLLLDKNLSGTLSPELGRFSSMKILDFMWNNISGTIPKEIGNITSLELLLLSGNQLTGSLPEELGKLSNLNRIQVDENRISGPIPLSFANLSKARHIHMNNNSLSGPIPPELSQLPILLHLLLDNNNLSGYLPPELSEITHLLILQLDNNH...

XP_057789770.1
MSVSLLLIVLLATSMCLEKKQLEMVVTFGYAKFGRIVIVFLCLASVPIIANTQRTPQEEVNALQSIKNSFTDPYRNLRNWNRGDPCTTNWTGVICHNLTPTDGYLHITELLLLDKNLSGTLSPELGRFSSMKILDFMWNNISGTIPKEIGNITSLELLLLSGNQLTGSLPEELGKLSNLNRIQVDENRISGPIPLSFANLSKARHIHMNNNSLSGPIPPELSQLPILLHLLLDNNNLSGYLPPELSEITHLLILQLDNNH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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