当前解析结果
SmilChr01G000590| 统一新 Gene ID | SmilChr01G000590 |
|---|---|
| 名称 | SmilChr01G000590 |
| 描述 | cation/H(+) antiporter 24-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 12820889 - 12823491 / - |
| NCBI Gene ID | LOC131006618 |
|---|---|
| GeneID | 131006618 |
| locus_tag | - |
| NCBI Name | LOC131006618 |
| 原始查询 | LOC131006618 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cation/H(+) antiporter 24-like |
| 产物 | cation/H(+) antiporter 24-like |
| Arabidopsis | AT5G58460 (CHX25)cation/H+ exchanger 25 [Source:NCBI gene (formerly Entrezgene);Acc:835959] identity=40.5; qcov=1; evalue=0; confidence=medium |
| Rice | Os05g0485000 (OsCHX16)- identity=34.4; qcov=1.03; evalue=2.72e-143; confidence=low |
| GO | GO:0006885 (regulation of pH); GO:0012505 (endomembrane system); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport) |
| KEGG | - |
| Pfam | PF00999 (Na_H_Exchanger); PF23256 (CHX17_2nd); PF23259 (CHX17_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006618 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789778.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057789778.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789778.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789778.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789778.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:12821115 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A18,B110,B124,B16,B6,B8,B88,C22,C67 |
Chr1:12821363 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,B53,B63 |
Chr1:12821495 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr1:12821633 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B25,C42,C80 |
Chr1:12821851 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C56 |
Chr1:12821851 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C56 |
Chr1:12821890 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,B29 |
Chr1:12822037 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,D10 |
Chr1:12822041 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr1:12822206 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C64 |
Chr1:12822245 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr1:12822250 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789778.1PF00999
Na_H_Exchanger 55-439 aa
PF23256
CHX17_2nd 500-607 aa
PF23259
CHX17_C 623-765 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789778.1 |
Pfam | PF00999 |
Na_H_Exchanger | Domain | 55 | 439 | 5e-41 | 141.5 | Sodium/hydrogen exchanger, transmembrane |
XP_057789778.1 |
Pfam | PF23256 |
CHX17_2nd | Domain | 500 | 607 | 2.6e-21 | 76.8 | Plant cation/H(+) antiporter domain |
XP_057789778.1 |
Pfam | PF23259 |
CHX17_C | Domain | 623 | 765 | 8.1e-47 | 159.7 | Plant cation/H(+) antiporter, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。