当前解析结果
SmilChr01G001839| 统一新 Gene ID | SmilChr01G001839 |
|---|---|
| 名称 | SmilChr01G001839 |
| 描述 | uncharacterized SmilChr01G001839 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 33323472 - 33324897 / + |
| NCBI Gene ID | LOC131006641 |
|---|---|
| GeneID | 131006641 |
| locus_tag | - |
| NCBI Name | LOC131006641 |
| 原始查询 | LOC131006641 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0597300; species=rice; confidence=low |
| 产物 | hit=Os12g0597300; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=26.1; qcov=0.993; evalue=6.23e-46; confidence=low |
| Rice | Os12g0597300- identity=28.2; qcov=1.01; evalue=1.81e-49; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006641 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057789797.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057789797.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789797.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789797.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789797.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:33323502 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B140,B40,B78,C71 |
Chr1:33323535 |
C |
T |
EMS_canonical_SNV | stop_gained | 73 | A15,A18,A19,A2,A20,A6,A7,B10,B117,B119,B120,B133,B134,B14,B15,B16,B17,B18,B2,B26,B3,B34,B38,B39,B45,B55,B57,B6,B62,B66,B67,B68,B69,B73,B74,B75,B76,B78,B82,B83,B86,B87,B89,B9,B94,B95,C14,C15,C16,C18,C20,C28,C29,C31,C33,C34,C42,C44,C46,C47,C49,C50,C51,C54,C63,C64,C65,C66,C70,C77,C85,C9,D9 |
Chr1:33323545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr1:33323563 |
G |
A |
EMS_canonical_SNV | stop_gained | 21 | A1,A10,A2,A8,B121,B122,B19,B46,B55,B56,B9,B96,C1,C14,C27,C35,C38,C39,C55,C79,C83 |
Chr1:33323564 |
G |
A |
EMS_canonical_SNV | stop_gained | 9 | A4,B115,B20,B27,B31,B37,C57,C75,C86 |
Chr1:33323565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B139,B64,B82 |
Chr1:33323575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B130,B44,C24 |
Chr1:33323583 |
C |
T |
EMS_canonical_SNV | stop_gained | 14 | A14,A18,A5,B103,B131,B36,B58,B76,B91,C3,C33,C57,C60,C76 |
Chr1:33323594 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr1:33323646 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C14,C83 |
Chr1:33323651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B114,C35,C49,C77 |
Chr1:33323689 |
AG |
A |
1bp_deletion | frameshift_variant | 12 | A21,A24,B100,B140,B24,B47,C20,C30,C37,C74,C85,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789797.1PF10551
MULE 60-154 aa
PF00872
Transposase_mut 77-204 aa
PF04434
SWIM 305-335 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789797.1 |
Pfam | PF10551 |
MULE | Domain | 60 | 154 | 1.9e-17 | 64.1 | MULE transposase domain |
XP_057789797.1 |
Pfam | PF00872 |
Transposase_mut | Family | 77 | 204 | 1.5e-10 | 41.3 | Transposase, Mutator family |
XP_057789797.1 |
Pfam | PF04434 |
SWIM | Domain | 305 | 335 | 3.1e-07 | 30.5 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。