当前解析结果
SmilChr01G000622| 统一新 Gene ID | SmilChr01G000622 |
|---|---|
| 名称 | SmilChr01G000622 |
| 描述 | cation/H(+) antiporter 14-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 13932901 - 13935849 / + |
| NCBI Gene ID | LOC131006653 |
|---|---|
| GeneID | 131006653 |
| locus_tag | - |
| NCBI Name | LOC131006653 |
| 原始查询 | LOC131006653 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cation/H(+) antiporter 14-like |
| 产物 | cation/H(+) antiporter 14-like |
| Arabidopsis | AT1G06970 (CHX14)cation/hydrogen exchanger 14 [Source:NCBI gene (formerly Entrezgene);Acc:837207] identity=38.3; qcov=1.01; evalue=5.72e-180; confidence=medium |
| Rice | Os05g0485000 (OsCHX16)- identity=30.7; qcov=0.979; evalue=2.19e-133; confidence=low |
| GO | GO:0006885 (regulation of pH); GO:0012505 (endomembrane system); GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport) |
| KEGG | - |
| Pfam | PF00999 (Na_H_Exchanger); PF23256 (CHX17_2nd); PF23259 (CHX17_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006653 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057789802.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057789802.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789802.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789802.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789802.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:13933634 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr1:13934308 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B114,B44,B58,C51,C74 |
Chr1:13934374 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B130 |
Chr1:13934757 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,B29 |
Chr1:13934841 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,B9,C44 |
Chr1:13934867 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr1:13934871 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B118 |
Chr1:13934871 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B118 |
Chr1:13934874 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B118 |
Chr1:13934874 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B118 |
Chr1:13934889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:13935071 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057789802.1PF00999
Na_H_Exchanger 59-432 aa
PF23256
CHX17_2nd 495-609 aa
PF23259
CHX17_C 620-759 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789802.1 |
Pfam | PF00999 |
Na_H_Exchanger | Domain | 59 | 432 | 5.8e-41 | 141.3 | Sodium/hydrogen exchanger, transmembrane |
XP_057789802.1 |
Pfam | PF23256 |
CHX17_2nd | Domain | 495 | 609 | 8.1e-37 | 126.9 | Plant cation/H(+) antiporter domain |
XP_057789802.1 |
Pfam | PF23259 |
CHX17_C | Domain | 620 | 759 | 6.1e-34 | 117.9 | Plant cation/H(+) antiporter, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。