当前解析结果
SmilChr01G000671| 统一新 Gene ID | SmilChr01G000671 |
|---|---|
| 名称 | SmilChr01G000671 |
| 描述 | nardilysin-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 14850786 - 14865235 / + |
| NCBI Gene ID | LOC131006666 |
|---|---|
| GeneID | 131006666 |
| locus_tag | - |
| NCBI Name | LOC131006666 |
| 原始查询 | LOC131006666 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nardilysin-like |
| 产物 | nardilysin-like |
| Arabidopsis | AT1G06900 (AT1G06900)Insulinase (Peptidase family M16) family protein [Source:NCBI gene (formerly Entrezgene);Acc:837200] identity=67.8; qcov=0.998; evalue=0; confidence=high |
| Rice | Os03g0336300- identity=62.9; qcov=1; evalue=0; confidence=high |
| GO | GO:0004222 (metalloendopeptidase activity); GO:0005829 (cytosol); GO:0006508 (proteolysis); GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF00675 (Peptidase_M16); PF05193 (Peptidase_M16_C); PF16187 (Peptidase_M16_M); PF22456 (PqqF-like_C_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006666 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057789810.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057789810.1 |
| 3 | Chloroplast | 叶绿体 | 0.20000 | XP_057789809.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057789809.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057789810.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:14850887 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B114,B44,B58,C51,C74 |
Chr1:14851180 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr1:14851461 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr1:14853776 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,D10 |
Chr1:14853952 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr1:14858812 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B6,D3 |
Chr1:14858931 |
T |
TAC |
2bp_insertion | frameshift_variant | 1 | C26 |
Chr1:14858931 |
T |
TAC |
2bp_insertion | CDS_variant | 1 | C26 |
Chr1:14859089 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C77 |
Chr1:14863330 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr1:14864703 |
A |
AT |
1bp_insertion | frameshift_variant | 3 | B114,B58,C51 |
Chr1:14864703 |
A |
AT |
1bp_insertion | CDS_variant | 3 | B114,B58,C51 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789809.1PF00675
Peptidase_M16 149-265 aa
PF05193
Peptidase_M16_C 304-484 aa
PF16187
Peptidase_M16_M 491-775 aa
PF05193
Peptidase_M16_C 781-966 aa
PF22456
PqqF-like_C_4 886-985 aa
XP_057789810.1PF00675
Peptidase_M16 4-73 aa
PF05193
Peptidase_M16_C 112-292 aa
PF16187
Peptidase_M16_M 299-583 aa
PF05193
Peptidase_M16_C 589-774 aa
PF22456
PqqF-like_C_4 694-793 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789809.1 |
Pfam | PF00675 |
Peptidase_M16 | Family | 149 | 265 | 2.3e-34 | 119.1 | Insulinase (Peptidase family M16) |
XP_057789809.1 |
Pfam | PF05193 |
Peptidase_M16_C | Domain | 304 | 484 | 2e-33 | 116.5 | Peptidase M16 inactive domain |
XP_057789809.1 |
Pfam | PF16187 |
Peptidase_M16_M | Family | 491 | 775 | 8.2e-86 | 288.3 | Middle or third domain of peptidase_M16 |
XP_057789809.1 |
Pfam | PF05193 |
Peptidase_M16_C | Domain | 781 | 966 | 2e-33 | 116.5 | Peptidase M16 inactive domain |
XP_057789809.1 |
Pfam | PF22456 |
PqqF-like_C_4 | Domain | 886 | 985 | 3.1e-25 | 88.9 | PQQ synthase PqqF-like, C-terminal lobe domain 4 |
XP_057789810.1 |
Pfam | PF00675 |
Peptidase_M16 | Family | 4 | 73 | 6.9e-16 | 59.2 | Insulinase (Peptidase family M16) |
XP_057789810.1 |
Pfam | PF05193 |
Peptidase_M16_C | Domain | 112 | 292 | 1e-33 | 117.4 | Peptidase M16 inactive domain |
XP_057789810.1 |
Pfam | PF16187 |
Peptidase_M16_M | Family | 299 | 583 | 5.5e-86 | 288.9 | Middle or third domain of peptidase_M16 |
XP_057789810.1 |
Pfam | PF05193 |
Peptidase_M16_C | Domain | 589 | 774 | 1e-33 | 117.4 | Peptidase M16 inactive domain |
XP_057789810.1 |
Pfam | PF22456 |
PqqF-like_C_4 | Domain | 694 | 793 | 2.2e-25 | 89.4 | PQQ synthase PqqF-like, C-terminal lobe domain 4 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。