Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000639`

染色体: Chr01 坐标: 14368580-14375203 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000639`
名称	SmilChr01G000639
描述	uncharacterized SmilChr01G000639
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	14368580 - 14375203 / `+`

ID 对照

NCBI Gene ID	`LOC131006669`
GeneID	`131006669`
locus_tag	`-`
NCBI Name	`LOC131006669`
原始查询	`LOC131006669`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835949]; symbol=AT5G58370; hit=AT5G58370; species=arabidopsis; confidence=medium
产物	P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835949]; symbol=AT5G58370; hit=AT5G58370; species=arabidopsis; confidence=medium
Arabidopsis	`AT5G58370` (AT5G58370) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835949] identity=76; qcov=0.494; evalue=8.22e-167; confidence=medium
Rice	`Os03g0816400` - identity=70.9; qcov=0.494; evalue=2.82e-157; confidence=medium
GO	GO:0005525 (GTP binding)
KEGG	-
Pfam	PF01926 (MMR_HSR1)
InterPro	-
eggNOG	-
NR	GeneID:131006669

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789812.1`
2	Nucleolus	核仁	0.80000	`XP_057789812.1`
3	Chromosome	染色体	0.00000	`XP_057789812.1`
4	Centromere	着丝粒	0.00000	`XP_057789812.1`
5	Chromatin	染色质	0.00000	`XP_057789812.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:14369117`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B63,B72,C71,C83
`Chr1:14369173`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B63,B72,C71,C83
`Chr1:14369195`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B63,B72,C71,C83
`Chr1:14369197`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr1:14369217`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B72,C71,C83
`Chr1:14369219`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B63,B72,C71,C83
`Chr1:14369289`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B32,B35,B83,D9
`Chr1:14369310`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C16,C32,C68
`Chr1:14369312`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B63,B72,C71,C83
`Chr1:14369329`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B132
`Chr1:14369329`	`AG`	`A`	1bp_deletion	CDS_variant	1	B132
`Chr1:14369337`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B63,B72,C71,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789812.1

634 aa

317

634

MMR_HSR1

PF01926 MMR_HSR1 459-577 aa

XP_057789813.1

634 aa

317

634

MMR_HSR1

PF01926 MMR_HSR1 459-577 aa

XP_057789814.1

634 aa

317

634

MMR_HSR1

PF01926 MMR_HSR1 459-577 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789812.1`	Pfam	`PF01926`	MMR_HSR1	Family	459	577	6.4e-19	68.8	50S ribosome-binding GTPase
`XP_057789813.1`	Pfam	`PF01926`	MMR_HSR1	Family	459	577	6.4e-19	68.8	50S ribosome-binding GTPase
`XP_057789814.1`	Pfam	`PF01926`	MMR_HSR1	Family	459	577	6.4e-19	68.8	50S ribosome-binding GTPase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057933831.1
CTCATCGTCCAGGGTAATTAATGCAGAGAATCATCCTTCAGTTACACAAGAAATACCCATTATTTATGAGAGTGGCCCAATAGTTAATTTAACAAAGCAAGGCCCGACCCTCGTTTCCTTTTCTCAGGCGCGCTGTGTGCAAAGCGCAACCAAACTCTTCGTCTTTTTCCATTTCCGGCGAAACACTCTCCTTCTTATGATTCTTCTCCTCCGCCGCCTATCGCATCTCGTCGTCCTTCGTTGAGCGCAGCCGCCGCCTG...

XM_057933830.1
CCATTATTTATGAGAGTGGCCCAATAGTTAATTTAACAAAGCAAGGCCCGACCCTCGTTTCCTTTTCTCAGGCGCGCTGTGTGCAAAGCGCAACCAAACTCTTCGTCTTTTTCCATTTCCGGCGAAACACTCTCCTTCTTATGATTCTTCTCCTCCGCCGCCTATCGCATCTCGTCGTCCTTCGTTGAGCGCAGCCGCCGCCTGGTATGCTCTTCGTGATTTTTAGCACGCGCGTGCATCCGACTCAAGCATTTCATCAA...

CDS

3 records

下载 CDS FASTA

LOC131006669
ATGCCTGTGAGAAGAAGTTCAAGCAATGACGGTTCTGTTAAAGTTAGTAGAAAACCGAGGGTTGCCGTAGGGAGCTCAAAAGGGTCGGAAGATGGTGTGAGAACCCCACGGTCAAGGGATAGTGGTATTGGTAGAGGCCAAAGGAAAGCAAGAGTTCCAACGGATGGGTCGAACGGGTCAAGTGGTAGTGTTAGAACTGGAGATGGTAAGAAGATAGGGAATAGAAAGTTGCAAAGCAGAGGAAATGGTAGTGATGATGT...

Protein

3 records

下载 Protein FASTA

XP_057789812.1
MPVRRSSSNDGSVKVSRKPRVAVGSSKGSEDGVRTPRSRDSGIGRGQRKARVPTDGSNGSSGSVRTGDGKKIGNRKLQSRGNGSDDVPYHSVNGRSSDTRGRGKRDWKTKSGSEGLEAVVDGKLDRKRKRISADPGLVEQGKFGGNDRKFRSQSKENVLNSSRDKFRGSESLGKDYAFKDSRRNKSDSCMDNGKKLSRQKDCEFTDSSRNKRVTESHKFKGSESLGKDYEFKVSSRNKSVTESGKFRGSESLDKRGQNGK...

XP_057789813.1
MPVRRSSSNDGSVKVSRKPRVAVGSSKGSEDGVRTPRSRDSGIGRGQRKARVPTDGSNGSSGSVRTGDGKKIGNRKLQSRGNGSDDVPYHSVNGRSSDTRGRGKRDWKTKSGSEGLEAVVDGKLDRKRKRISADPGLVEQGKFGGNDRKFRSQSKENVLNSSRDKFRGSESLGKDYAFKDSRRNKSDSCMDNGKKLSRQKDCEFTDSSRNKRVTESHKFKGSESLGKDYEFKVSSRNKSVTESGKFRGSESLDKRGQNGK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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