当前解析结果
SmilChr01G000717| 统一新 Gene ID | SmilChr01G000717 |
|---|---|
| 名称 | SmilChr01G000717 |
| 描述 | uncharacterized SmilChr01G000717 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 16060426 - 16065244 / - |
| NCBI Gene ID | LOC131006734 |
|---|---|
| GeneID | 131006734 |
| locus_tag | - |
| NCBI Name | LOC131006734 |
| 原始查询 | LOC131006734 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Low temperature viability protein [Source:NCBI gene (formerly Entrezgene);Acc:824161]; symbol=AT3G49990; hit=AT3G49990; species=arabidopsis; confidence=high |
| 产物 | Low temperature viability protein [Source:NCBI gene (formerly Entrezgene);Acc:824161]; symbol=AT3G49990; hit=AT3G49990; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G49990 (AT3G49990)Low temperature viability protein [Source:NCBI gene (formerly Entrezgene);Acc:824161] identity=45.8; qcov=1.03; evalue=6e-119; confidence=high |
| Rice | Os03g0372700 (OSJNBb0097F01.8)- identity=41.7; qcov=1.01; evalue=1.71e-95; confidence=medium |
| GO | GO:0000056 (ribosomal small subunit export from nucleus); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0030688 (preribosome, small subunit precursor); GO:0042274 (ribosomal small subunit biogenesis) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006734 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057789849.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057789849.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057789849.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057789849.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057789849.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:16061676 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr1:16061735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,B23 |
Chr1:16061965 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B53,C16 |
Chr1:16062225 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr1:16062468 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B98,C25 |
Chr1:16062864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B6,D3 |
Chr1:16062866 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B98,C25 |
Chr1:16062962 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B53,C16 |
Chr1:16063520 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B124,B94 |
Chr1:16063588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,C25 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。