Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000730`

染色体: Chr01 坐标: 16247441-16254213 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000730`
名称	SmilChr01G000730
描述	uncharacterized SmilChr01G000730
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	16247441 - 16254213 / `+`

ID 对照

NCBI Gene ID	`LOC131006746`
GeneID	`131006746`
locus_tag	`-`
NCBI Name	`LOC131006746`
原始查询	`LOC131006746`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823857]; symbol=AT3G47040; hit=AT3G47040; species=arabidopsis; confidence=high
产物	Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823857]; symbol=AT3G47040; hit=AT3G47040; species=arabidopsis; confidence=high
Arabidopsis	`AT3G47040` (AT3G47040) Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:823857] identity=69.4; qcov=0.994; evalue=0; confidence=high
Rice	`Os03g0749500` - identity=57.7; qcov=0.992; evalue=0; confidence=high
GO	GO:0008422 (beta-glucosidase activity); GO:0009251 (glucan catabolic process)
KEGG	smil00460 (Cyanoamino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00999 (Biosynthesis of various plant secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00933 (Glyco_hydro_3); PF01915 (Glyco_hydro_3_C)
InterPro	-
eggNOG	-
NR	GeneID:131006746

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057789853.1`
2	Cytosol	细胞质基质	1.00000	`XP_057789853.1`
3	Secreted	分泌到胞外	0.20000	`XP_057789855.1`
4	Nucleus	细胞核	0.00000	`XP_057789853.1`
5	Chromosome	染色体	0.00000	`XP_057789853.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:16247877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B122,B129,B139,D11
`Chr1:16247892`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr1:16248263`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B126,B9,C44
`Chr1:16249525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B19,B27,B98,C56,C60
`Chr1:16249787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:16250856`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B19,B27,C56,C60
`Chr1:16251006`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr1:16252254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B19,B27,C56,C60
`Chr1:16252319`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:16253466`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr1:16253507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B11,B36,C27,C41,C47
`Chr1:16253578`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B19,B27,C56,C60

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789853.1

599 aa

300

599

Glyco_hydro_3

Glyco_hydro_3_C

PF00933 Glyco_hydro_3 24-352 aa PF01915 Glyco_hydro_3_C 389-598 aa

XP_057789855.1

484 aa

242

484

Glyco_hydro_3

Glyco_hydro_3_C

PF00933 Glyco_hydro_3 4-237 aa PF01915 Glyco_hydro_3_C 274-483 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789853.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	24	352	1.6e-73	248.6	Glycosyl hydrolase family 3 N terminal domain
`XP_057789853.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	389	598	6.8e-36	124.8	Glycosyl hydrolase family 3 C-terminal domain
`XP_057789855.1`	Pfam	`PF00933`	Glyco_hydro_3	Domain	4	237	5.6e-55	187.7	Glycosyl hydrolase family 3 N terminal domain
`XP_057789855.1`	Pfam	`PF01915`	Glyco_hydro_3_C	Domain	274	483	4.5e-36	125.4	Glycosyl hydrolase family 3 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933870.1
AATAAAGCATACCAAAATCAGCCGACCATTTCTTCTCTTCCATGCTTTCCCGAAATCATTAGTTATAGTTGCAACACAGTCAATTTCCCAATATGAATATTTGAATGGAAAATGAAGTCCCAATTTAAGAATATACATGAATGCAGACTCTCTCTCCTTCAGAAAATATTCCCGAGTATCTCTTTCGCTCAATCCATATCATCATATTTGTCATTATTCCCAACGACATTCACGAGCGAAGATTTTACCAATTATGGAAA...

XM_057933872.1
TGATTGACGGCTTCCAGAAGGGGGCTCTGGTGACGCGCCTCGGCATCCCCATTTTCTACGGCGTCGACGCCGTCCACGGGAACAACAATGTCTACGGCGCTACCATTTTTCCTCACAACATTGGCCTTGGCGCCACTAGTGGAATTCTTTGATGCTTTGGTTATATGATGACACTAATATCGGAGAATGCAATATAGAGATGCCGATTTAACTAGGAAAATTGGGGAGGTAACGGCTATTGAAGTAAGGGCAAGCGGAGC...

CDS

2 records

下载 CDS FASTA

LOC131006746
ATGGATTGCGTGTACAAGGATCCCAACGCTCCCGTGGAAGCGCGTGTGAAGGACCTCCTCTCACGGATGACTCTCCTCGAGAAGATCGGCCAAATGACTCAGATCGAGCGCAGCGTGGCGTCCGCTTCAGCCATCAGAGACCGCTTCATCGGAAGTGTGCTGAGTGGAGGAGGAAGCAAGCCATTTGAGAATGCGAAATCGGCGGATTGGGTGGATATGATTGACGGCTTCCAGAAGGGGGCTCTGGTGACGCGCCTCGG...

LOC131006746
ATGCAATATAGAGATGCCGATTTAACTAGGAAAATTGGGGAGGTAACGGCTATTGAAGTAAGGGCAAGCGGAGCCCATTATGCATTTGCTCCATGTGTTGCTGTTACCAGAGACCCCAGATGGGGAAGAAGTTATGAAAGTTATAGTGAAGACACTGAAGTAGTCAGAAAGATGACCTCTCTTGTTACAGGCTTGCAAGGTCAGCCACCTGAAGGGCATCCAAAGGGATATCCATTTCTGGCTGGAAGAAAAAATGTTCT...

Protein

2 records

下载 Protein FASTA

XP_057789853.1
MDCVYKDPNAPVEARVKDLLSRMTLLEKIGQMTQIERSVASASAIRDRFIGSVLSGGGSKPFENAKSADWVDMIDGFQKGALVTRLGIPIFYGVDAVHGNNNVYGATIFPHNIGLGATRDADLTRKIGEVTAIEVRASGAHYAFAPCVAVTRDPRWGRSYESYSEDTEVVRKMTSLVTGLQGQPPEGHPKGYPFLAGRKNVLASAKHFVGDGGTEKGINEGNTITSYEDLERIHLAPYLDCLSQGVCSVMASYSSWNGRK...

XP_057789855.1
MQYRDADLTRKIGEVTAIEVRASGAHYAFAPCVAVTRDPRWGRSYESYSEDTEVVRKMTSLVTGLQGQPPEGHPKGYPFLAGRKNVLASAKHFVGDGGTEKGINEGNTITSYEDLERIHLAPYLDCLSQGVCSVMASYSSWNGRKLHTDHYLLTEVLKKKLGFMGFIISDWEALDRLYVPHGSNYRQSILSTINAGIDMVMVPFRYELFLDEFLSLVESGEILMSRIDDAVERILRVKFIAGLFEYPLADLSLLEVVGCK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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