Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000752`

染色体: Chr01 坐标: 16605241-16608282 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000752`
名称	SmilChr01G000752
描述	uncharacterized SmilChr01G000752
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	16605241 - 16608282 / `+`

ID 对照

NCBI Gene ID	`LOC131006763`
GeneID	`131006763`
locus_tag	`-`
NCBI Name	`LOC131006763`
原始查询	`LOC131006763`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	low-temperature-induced protein [Source:NCBI gene (formerly Entrezgene);Acc:823828]; symbol=AT3G46750; hit=AT3G46750; species=arabidopsis; confidence=low
产物	low-temperature-induced protein [Source:NCBI gene (formerly Entrezgene);Acc:823828]; symbol=AT3G46750; hit=AT3G46750; species=arabidopsis; confidence=low
Arabidopsis	`AT3G46750` (AT3G46750) low-temperature-induced protein [Source:NCBI gene (formerly Entrezgene);Acc:823828] identity=29.8; qcov=0.447; evalue=2.98e-19; confidence=low
Rice	`Os10g0505900` - identity=36.4; qcov=0.181; evalue=2.89e-07; confidence=weak
GO	GO:0009737 (response to abscisic acid)
KEGG	-
Pfam	PF23399 (LTI65_PGEED)
InterPro	-
eggNOG	-
NR	GeneID:131006763

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057789875.1`
2	Cytosol	细胞质基质	0.60000	`XP_057789876.1`
3	Cell membrane	细胞膜	0.40000	`XP_057789875.1`
4	Nucleus	细胞核	0.00000	`XP_057789875.1`
5	Chromosome	染色体	0.00000	`XP_057789875.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:16605742`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr1:16605836`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C11
`Chr1:16605856`	`AC`	`A`	1bp_deletion	frameshift_variant	1	D3
`Chr1:16605856`	`AC`	`A`	1bp_deletion	CDS_variant	1	D3
`Chr1:16605952`	`A`	`AC`	1bp_insertion	frameshift_variant	2	A20,C17
`Chr1:16605952`	`A`	`AC`	1bp_insertion	CDS_variant	2	A20,C17
`Chr1:16605965`	`CG`	`C`	1bp_deletion	frameshift_variant	48	A10,A14,A19,A23,A24,A25,A5,A9,B100,B104,B106,B11,B110,B113,B120,B122,B13,B20,B24,B25,B33,B34,B40,B41,B44,B47,B50,B63,B74,B77,B8,B80,B95,B97,C1,C23,C28,C32,C35,C37,C40,C53,C68,C72,C76,C86,C87,C9
`Chr1:16606023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789875.1

643 aa

322

643

LTI65_PGEED

PF23399 LTI65_PGEED 417-447 aa

XP_057789876.1

608 aa

304

608

LTI65_PGEED

PF23399 LTI65_PGEED 417-447 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789875.1`	Pfam	`PF23399`	LTI65_PGEED	Disordered	417	447	4e-17	62.4	LTI65/LTI78 PGEED repeat
`XP_057789876.1`	Pfam	`PF23399`	LTI65_PGEED	Disordered	417	447	3.5e-17	62.6	LTI65/LTI78 PGEED repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933893.1
AAAAAAGTAATGAAGCAGGAGAGTCATTGTAGAGTAGGACCAAGTCAAGTTACTAAATAAAGTACTCCACAATTGTATGGAGTCACATATTTGGAAAGCCAAAGGCAGAATATAGTTTTAGATTGTAGTCCATTGAAGAAGCCGAGAAACATGGCTTAAAAAAAGGTGGCTGCGCGCGCTCTTATATATTCCTCGTTGCTTTGCATTCGCGAAATCAACACATGAAAAACACAAGAATGGCTCAACTTGAGAGGAGAAAG...

XM_057933892.1
AAAAAGTAATGAAGCAGGAGAGTCATTGTAGAGTAGGACCAAGTCAAGTTACTAAATAAAGTACTCCACAATTGTATGGAGTCACATATTTGGAAAGCCAAAGGCAGAATATAGTTTTAGATTGTAGTCCATTGAAGAAGCCGAGAAACATGGCTTAAAAAAAGGTGGCTGCGCGCGCTCTTATATATTCCTCGTTGCTTTGCATTCGCGAAATCAACACATGAAAAACACAAGAATGGCTCAACTTGAGAGGAGAAAGA...

CDS

2 records

下载 CDS FASTA

LOC131006763
ATGAAAAACACAAGAATGGCTCAACTTGAGAGGAGAAAGAAATTATCAGAAAGCAGCCCTAAATCGCCTAAATCTCAAACGTCACCCACTTTCGACCAGCTCCTAAGAGTTGAAGAGGCATACTGGTCATCAAATGTGTCGCCCGGCGGTAGAGCATGCCATGATCATGAAGTGTGCCCCAGCCATTGCACTTCCGGCGACAACAAGAAGTCGGTTCTCTCTAAGGTCAAGGACACGGCCAAGAAGCTGAGGCACAGTAT...

Protein

2 records

下载 Protein FASTA

XP_057789875.1
MKNTRMAQLERRKKLSESSPKSPKSQTSPTFDQLLRVEEAYWSSNVSPGGRACHDHEVCPSHCTSGDNKKSVLSKVKDTAKKLRHSISGRRKNGIEFHDHDHDHNYHHSHVHNYQHSHDHNRGLSHGHGHSHSQSHSHDHDHITPSWGATVEDDYDHEQDYDPEYLGAPMYESEAAPDCLKETARQHPRAEPVVSASHRAPNMNYEAALQRNDKPVTPNTGVITNATHAVAEKLAPACAAVSDAAHNTTQTIANKLAPAC...

XP_057789876.1
MKNTRMAQLERRKKLSESSPKSPKSQTSPTFDQLLRVEEAYWSSNVSPGGRACHDHEVCPSHCTSGDNKKSVLSKVKDTAKKLRHSISGRRKNGIEFHDHDHDHNYHHSHVHNYQHSHDHNRGLSHGHGHSHSQSHSHDHDHITPSWGATVEDDYDHEQDYDPEYLGAPMYESEAAPDCLKETARQHPRAEPVVSASHRAPNMNYEAALQRNDKPVTPNTGVITNATHAVAEKLAPACAAVSDAAHNTTQTIANKLAPAC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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