Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000759`

染色体: Chr01 坐标: 16660712-16678977 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000759`
名称	SmilChr01G000759
描述	uncharacterized protein At4g17910-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	16660712 - 16678977 / `-`

ID 对照

NCBI Gene ID	`LOC131006768`
GeneID	`131006768`
locus_tag	`-`
NCBI Name	`LOC131006768`
原始查询	`LOC131006768`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os03g0378200; species=rice; confidence=high
产物	hit=Os03g0378200; species=rice; confidence=high
Arabidopsis	`AT4G17910` (AT4G17910) transferases, transferring acyl groups [Source:NCBI gene (formerly Entrezgene);Acc:827515] identity=52.9; qcov=1.01; evalue=1.14e-160; confidence=high
Rice	`Os03g0378200` - identity=54; qcov=1; evalue=9.94e-163; confidence=high
GO	GO:0005783 (endoplasmic reticulum); GO:0006506 (GPI anchor biosynthetic process); GO:0016020 (membrane); GO:0032216 (glucosaminyl-phosphatidylinositol O-acyltransferase activity); GO:0072659 (protein localization to plasma membrane)
KEGG	smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF06423 (GWT1)
InterPro	-
eggNOG	-
NR	GeneID:131006768

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057789880.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057789880.1`
3	Nucleus	细胞核	0.00000	`XP_057789880.1`
4	Chromosome	染色体	0.00000	`XP_057789880.1`
5	Centromere	着丝粒	0.00000	`XP_057789880.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:16661166`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C32,C68,D4
`Chr1:16661336`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	A18,B110,B16,B88,C22
`Chr1:16661336`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A18,B110,B16,B88,C22
`Chr1:16661911`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B140
`Chr1:16661911`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr1:16662073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C32,C68,D4
`Chr1:16662407`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr1:16662590`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C32,C68,D4
`Chr1:16662682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:16662886`	`G`	`A`	EMS_canonical_SNV	stop_gained	54	A15,A22,A5,A6,B1,B103,B108,B11,B111,B113,B118,B132,B135,B136,B139,B14,B16,B18,B27,B28,B31,B5,B52,B54,B60,B65,B67,B7,B70,B77,B79,B82,B84,B89,C11,C18,C2,C21,C32,C39,C4,C40,C45,C5,C50,C55,C58,C64,C66,C68,C69,C75,C80,C84
`Chr1:16663598`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C32,C68,D4
`Chr1:16663648`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789880.1

473 aa

236

473

GWT1

PF06423 GWT1 22-461 aa

XP_057789881.1

473 aa

236

473

GWT1

PF06423 GWT1 22-461 aa

XP_057789882.1

459 aa

230

459

GWT1

PF06423 GWT1 8-447 aa

XP_057789883.1

459 aa

230

459

GWT1

PF06423 GWT1 8-447 aa

XP_057789884.1

459 aa

230

459

GWT1

PF06423 GWT1 8-447 aa

XP_057789885.1

459 aa

230

459

GWT1

PF06423 GWT1 8-447 aa

XP_057789886.1

459 aa

230

459

GWT1

PF06423 GWT1 8-447 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789880.1`	Pfam	`PF06423`	GWT1	Family	22	461	2.3e-127	426.4	GWT1
`XP_057789881.1`	Pfam	`PF06423`	GWT1	Family	22	461	2.3e-127	426.4	GWT1
`XP_057789882.1`	Pfam	`PF06423`	GWT1	Family	8	447	2e-127	426.6	GWT1
`XP_057789883.1`	Pfam	`PF06423`	GWT1	Family	8	447	2e-127	426.6	GWT1
`XP_057789884.1`	Pfam	`PF06423`	GWT1	Family	8	447	2e-127	426.6	GWT1
`XP_057789885.1`	Pfam	`PF06423`	GWT1	Family	8	447	2e-127	426.6	GWT1
`XP_057789886.1`	Pfam	`PF06423`	GWT1	Family	8	447	2e-127	426.6	GWT1

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057933900.1
TTTATTTAAACTAAGCCCACAAAGATTAAATGGCCCAAGTAATTATCCAAGAATCAGTAAATTAAAACTAAACTACAACTCTTCTTTCTTAAAACAAGCAATCAGATTTCTCTCTCTTCTCTCTCTCCTCACACACGTTCTCCCTCTCTCTGCGTTTTCTCACTCTGCGTCTTATTTTTCTCTCTCTCTCTCTTTCGGCGAGTGTCGCCGGTCCTCCCTGCCTCCGGCGCGGCGAGGCCGGCCCTCTCCTTTCCCCCTTT...

XM_057933903.1
TTTATTTAAACTAAGCCCACAAAGATTAAATGGCCCAAGTAATTATCCAAGAATCAGTAAATTAAAACTAAACTACAACTCTTCTTTCTTAAAACAAGCAATCAGATTTCTCTCTCTTCTCTCTCTCCTCACACACGTTCTCCCTCTCTCTGCGTTTTCTCACTCTGCGTCTTATTTTTCTCTCTCTCTCTCTTTCGGCGAGTGTCGCCGGTCCTCCCTGCCTCCGGCGCGGCGAGGCCGGCCCTCTCCTTTCCCCCTTT...

CDS

7 records

下载 CDS FASTA

LOC131006768
ATGAAATTCTCAAAGCATTTCGAAGCCAGTCAAGCTTCATCCATGGAGTCCTTCAATCCCAACAGACACCTCAAAGAACAATTCGTGAGCAACTTAACGGGATCTTCCAAGCTCGAAATTTTCATTATGGTCACAAATCTTTCAATTTTGGTTCTTATTAGACGTTGCATCGGATTCAACTGGATGAGTAATGGTTATCCTAAGAAAGATGATAACGTTGCTGGTGGTGGCAAGAGTTTCAAAGCTTGTGTTGTAGTATT...

Protein

7 records

下载 Protein FASTA

XP_057789880.1
MKFSKHFEASQASSMESFNPNRHLKEQFVSNLTGSSKLEIFIMVTNLSILVLIRRCIGFNWMSNGYPKKDDNVAGGGKSFKACVVVLLIDFLCIAVPYILYLTVLAEWTYWSTILVLLLLFCLKTFDRNGPSFLQEGGVDSIRENITSYRVSTMLVTCFSILAVDFKIFPRRYAKTETYGTSLMDLGVGSFVVANALVSRQARGITNMTLSNGLRSTSPLIILGFARLVSTSSVNYQIHVGEYGVHWNFFFTLAAVAILT...

XP_057789881.1
MKFSKHFEASQASSMESFNPNRHLKEQFVSNLTGSSKLEIFIMVTNLSILVLIRRCIGFNWMSNGYPKKDDNVAGGGKSFKACVVVLLIDFLCIAVPYILYLTVLAEWTYWSTILVLLLLFCLKTFDRNGPSFLQEGGVDSIRENITSYRVSTMLVTCFSILAVDFKIFPRRYAKTETYGTSLMDLGVGSFVVANALVSRQARGITNMTLSNGLRSTSPLIILGFARLVSTSSVNYQIHVGEYGVHWNFFFTLAAVAILT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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