Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000813`

染色体: Chr01 坐标: 17538558-17561262 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000813`
名称	SmilChr01G000813
描述	ABC transporter B family member 11-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	17538558 - 17561262 / `+`

ID 对照

NCBI Gene ID	`LOC131006803`
GeneID	`131006803`
locus_tag	`-`
NCBI Name	`LOC131006803`
原始查询	`LOC131006803`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter B family member 11-like
产物	ABC transporter B family member 11-like
Arabidopsis	`AT1G02520` (ABCB11) P-glycoprotein 11 [Source:NCBI gene (formerly Entrezgene);Acc:839353] identity=63.2; qcov=1.01; evalue=0; confidence=high
Rice	`Os01g0695700` (OsABCB4) - identity=52.3; qcov=1.01; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG	smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage))
Pfam	PF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro	-
eggNOG	-
NR	GeneID:131006803

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057789928.1`
2	Vacuole	液泡	0.60000	`XP_057789928.1`
3	Vacuole membrane	液泡膜	0.60000	`XP_057789928.1`
4	Nucleus	细胞核	0.00000	`XP_057789928.1`
5	Chromosome	染色体	0.00000	`XP_057789928.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:17542749`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B34
`Chr1:17542781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:17542805`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B60,C37
`Chr1:17542811`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B108
`Chr1:17542811`	`GC`	`G`	1bp_deletion	CDS_variant	1	B108
`Chr1:17542812`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C12,C31
`Chr1:17542870`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B75,C19,C82
`Chr1:17542888`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B75,C19,C82,C9
`Chr1:17542965`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr1:17543026`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr1:17544231`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr1:17553365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B139,B71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789928.1

1264 aa

632

1264

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 56-328 aa PF00005 ABC_tran 398-552 aa PF00664 ABC_membrane 689-957 aa PF00005 ABC_tran 1031-1181 aa

XP_057789929.1

1256 aa

628

1256

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 56-328 aa PF00005 ABC_tran 398-544 aa PF00664 ABC_membrane 681-949 aa PF00005 ABC_tran 1023-1173 aa

XP_057789930.1

1256 aa

628

1256

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 56-328 aa PF00005 ABC_tran 398-544 aa PF00664 ABC_membrane 681-949 aa PF00005 ABC_tran 1023-1173 aa

XP_057789931.1

1187 aa

594

1187

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 98-251 aa PF00005 ABC_tran 321-475 aa PF00664 ABC_membrane 612-880 aa PF00005 ABC_tran 954-1104 aa

XP_057789932.1

1143 aa

572

1143

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 2-207 aa PF00005 ABC_tran 277-431 aa PF00664 ABC_membrane 568-836 aa PF00005 ABC_tran 910-1060 aa

XP_057789933.1

1099 aa

550

1099

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 6-163 aa PF00005 ABC_tran 233-387 aa PF00664 ABC_membrane 524-792 aa PF00005 ABC_tran 866-1016 aa

XP_057789934.1

1047 aa

524

1047

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 5-111 aa PF00005 ABC_tran 181-335 aa PF00664 ABC_membrane 472-740 aa PF00005 ABC_tran 814-964 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789928.1`	Pfam	`PF00664`	ABC_membrane	Family	56	328	2.4e-111	372.6	ABC transporter transmembrane region
`XP_057789928.1`	Pfam	`PF00005`	ABC_tran	Domain	398	552	6.3e-67	225.1	ABC transporter
`XP_057789928.1`	Pfam	`PF00664`	ABC_membrane	Family	689	957	2.4e-111	372.6	ABC transporter transmembrane region
`XP_057789928.1`	Pfam	`PF00005`	ABC_tran	Domain	1031	1181	6.3e-67	225.1	ABC transporter
`XP_057789929.1`	Pfam	`PF00664`	ABC_membrane	Family	56	328	2.3e-111	372.6	ABC transporter transmembrane region
`XP_057789929.1`	Pfam	`PF00005`	ABC_tran	Domain	398	544	4.3e-68	228.9	ABC transporter
`XP_057789929.1`	Pfam	`PF00664`	ABC_membrane	Family	681	949	2.3e-111	372.6	ABC transporter transmembrane region
`XP_057789929.1`	Pfam	`PF00005`	ABC_tran	Domain	1023	1173	4.3e-68	228.9	ABC transporter
`XP_057789930.1`	Pfam	`PF00664`	ABC_membrane	Family	56	328	2.3e-111	372.6	ABC transporter transmembrane region
`XP_057789930.1`	Pfam	`PF00005`	ABC_tran	Domain	398	544	4.3e-68	228.9	ABC transporter
`XP_057789930.1`	Pfam	`PF00664`	ABC_membrane	Family	681	949	2.3e-111	372.6	ABC transporter transmembrane region
`XP_057789930.1`	Pfam	`PF00005`	ABC_tran	Domain	1023	1173	4.3e-68	228.9	ABC transporter
`XP_057789931.1`	Pfam	`PF00664`	ABC_membrane	Family	98	251	9.8e-81	272.1	ABC transporter transmembrane region
`XP_057789931.1`	Pfam	`PF00005`	ABC_tran	Domain	321	475	5.4e-67	225.3	ABC transporter
`XP_057789931.1`	Pfam	`PF00664`	ABC_membrane	Family	612	880	9.8e-81	272.1	ABC transporter transmembrane region
`XP_057789931.1`	Pfam	`PF00005`	ABC_tran	Domain	954	1104	5.4e-67	225.3	ABC transporter
`XP_057789932.1`	Pfam	`PF00664`	ABC_membrane	Family	2	207	4.1e-101	339.0	ABC transporter transmembrane region
`XP_057789932.1`	Pfam	`PF00005`	ABC_tran	Domain	277	431	4.8e-67	225.5	ABC transporter
`XP_057789932.1`	Pfam	`PF00664`	ABC_membrane	Family	568	836	4.1e-101	339.0	ABC transporter transmembrane region
`XP_057789932.1`	Pfam	`PF00005`	ABC_tran	Domain	910	1060	4.8e-67	225.5	ABC transporter
`XP_057789933.1`	Pfam	`PF00664`	ABC_membrane	Family	6	163	1.1e-81	275.3	ABC transporter transmembrane region
`XP_057789933.1`	Pfam	`PF00005`	ABC_tran	Domain	233	387	4.4e-67	225.6	ABC transporter
`XP_057789933.1`	Pfam	`PF00664`	ABC_membrane	Family	524	792	1.1e-81	275.3	ABC transporter transmembrane region
`XP_057789933.1`	Pfam	`PF00005`	ABC_tran	Domain	866	1016	4.4e-67	225.6	ABC transporter
`XP_057789934.1`	Pfam	`PF00664`	ABC_membrane	Family	5	111	2.8e-69	234.6	ABC transporter transmembrane region
`XP_057789934.1`	Pfam	`PF00005`	ABC_tran	Domain	181	335	3.7e-67	225.9	ABC transporter
`XP_057789934.1`	Pfam	`PF00664`	ABC_membrane	Family	472	740	2.8e-69	234.6	ABC transporter transmembrane region
`XP_057789934.1`	Pfam	`PF00005`	ABC_tran	Domain	814	964	3.7e-67	225.9	ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057933949.1
AGGAGTTGGCGTTGCCAGCACCCTTAGTCTCAACTCCAGCGGAGAGCACAACATTCTCTATCATTTTCCTGTCACCAAGAGTTCTCTCCAACGAGCAGAGAAGCCTCCATTTCGTTCAGCCAAGTTCTCAAGTTCCAGTTCATTCAACACGCCATATCCGAAAAGCAAGATAAACCACTCATTCACTTCTTGCCAGAAAACTCTAAGTTCAATTATTCCAGTTCGGCTAACTCAGCAACAAATCACCAACCAACATTTAT...

XM_057933947.1
TGGCGTTGCCAGCACCCTTAGTCTCAACTCCAGCGGAGAGCACAACATTCTCTATCATTTTCCTGTCACCAAGAGTTCTCTCCAACGAGCAGAGAAGCCTCCATTTCGTTCAGCCAAGTTCTCAAGTTCCAGTTCATTCAACACGCCATATCCGAAAAGCAAGATAAACCACTCATTCACTTCTTGCCAGAAAACTCTAAGTTCAATTATTCCAGTTCGGCTAACTCAGCAACAAATCACCAACCAACATTTATACTTCA...

CDS

7 records

下载 CDS FASTA

LOC131006803
ATGGCCGAAGTTAGCCCTTTTGAAGAACAACAAACGACGTCGGAGACCACAGAAAATGGCCGCAGCAGCCAAAGAATCTCCGAGAAGAATGAGAGCAAAAGTGTGGAGAAAGTTCCATACTACAAACTGTTTTGGTTTGCAGACGCTGCAGATTACGCGCTGATGGTGATGGGTGTGATAACATCTGTGGGGAGTGGTTTGGCGTTGCCTCTCATGACTTTCCTATACGGAGAATTAGCCAATTCTTTCGGACACAACGT...

Protein

7 records

下载 Protein FASTA

XP_057789928.1
MAEVSPFEEQQTTSETTENGRSSQRISEKNESKSVEKVPYYKLFWFADAADYALMVMGVITSVGSGLALPLMTFLYGELANSFGHNVETQALVDEVSKVSLKFLYLALGSGVATFAQVSCWMITGERQAARIRNLYLKAILRQDIGYFDKEINTGKIVERMSSDTLIIQDAMGEKIGKLIQLLSSFVGGFVIAFARGWLLTLVLLSVIPVLVVAAAFMTIVMARLTSRGQTAYSEAALLVEQTISSIRTVASFTGERRAV...

XP_057789929.1
MAEVSPFEEQQTTSETTENGRSSQRISEKNESKSVEKVPYYKLFWFADAADYALMVMGVITSVGSGLALPLMTFLYGELANSFGHNVETQALVDEVSKVSLKFLYLALGSGVATFAQVSCWMITGERQAARIRNLYLKAILRQDIGYFDKEINTGKIVERMSSDTLIIQDAMGEKIGKLIQLLSSFVGGFVIAFARGWLLTLVLLSVIPVLVVAAAFMTIVMARLTSRGQTAYSEAALLVEQTISSIRTVASFTGERRAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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