Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000826`

染色体: Chr01 坐标: 17795788-17801703 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000826`
名称	SmilChr01G000826
描述	homeobox-DDT domain protein RLT2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	17795788 - 17801703 / `-`

ID 对照

NCBI Gene ID	`LOC131006819`
GeneID	`131006819`
locus_tag	`-`
NCBI Name	`LOC131006819`
原始查询	`LOC131006819`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox-DDT domain protein RLT2
产物	homeobox-DDT domain protein RLT2
Arabidopsis	`AT4G03250` (AT4G03250) Homeodomain-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827999] identity=44.1; qcov=0.794; evalue=8.1e-71; confidence=medium
Rice	`Os01g0672201` - identity=49.1; qcov=0.129; evalue=4.3e-14; confidence=weak
GO	GO:0003677 (DNA binding)
KEGG	-
Pfam	PF00046 (Homeodomain); PF05920 (Homeobox_KN)
InterPro	-
eggNOG	-
NR	GeneID:131006819

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057789955.1`
2	Chromosome	染色体	0.00000	`XP_057789955.1`
3	Centromere	着丝粒	0.00000	`XP_057789955.1`
4	Chromatin	染色质	0.00000	`XP_057789955.1`
5	Telomere	端粒	0.00000	`XP_057789955.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:17796025`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C87,D11,D9
`Chr1:17796829`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C87,D11,D9
`Chr1:17796867`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr1:17798884`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr1:17798948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr1:17799328`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B47,B63
`Chr1:17799530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789955.1

520 aa

260

520

Homeodomain

Homeobox_KN

PF00046 Homeodomain 21-76 aa PF05920 Homeobox_KN 41-71 aa

XP_057789956.1

502 aa

251

502

Homeodomain

Homeobox_KN

PF00046 Homeodomain 21-76 aa PF05920 Homeobox_KN 41-71 aa

XP_057789957.1

475 aa

238

475

Homeodomain

Homeobox_KN

PF00046 Homeodomain 21-76 aa PF05920 Homeobox_KN 41-71 aa

XP_057789958.1

457 aa

228

457

Homeodomain

Homeobox_KN

PF00046 Homeodomain 21-76 aa PF05920 Homeobox_KN 41-71 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789955.1`	Pfam	`PF00046`	Homeodomain	Domain	21	76	3e-17	62.9	Homeodomain
`XP_057789955.1`	Pfam	`PF05920`	Homeobox_KN	Family	41	71	5.8e-07	30.0	Homeobox KN domain
`XP_057789956.1`	Pfam	`PF00046`	Homeodomain	Domain	21	76	2.8e-17	63.0	Homeodomain
`XP_057789956.1`	Pfam	`PF05920`	Homeobox_KN	Family	41	71	5.4e-07	30.1	Homeobox KN domain
`XP_057789957.1`	Pfam	`PF00046`	Homeodomain	Domain	21	76	2.7e-17	63.0	Homeodomain
`XP_057789957.1`	Pfam	`PF05920`	Homeobox_KN	Family	41	71	5.3e-07	30.1	Homeobox KN domain
`XP_057789958.1`	Pfam	`PF00046`	Homeodomain	Domain	21	76	2.5e-17	63.1	Homeodomain
`XP_057789958.1`	Pfam	`PF05920`	Homeobox_KN	Family	41	71	5e-07	30.2	Homeobox KN domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057933975.1
TCACATTTCTAAATTTGTTTTATTGCAGATGATTGAAAATATGACAATGCTTCTAAATTTAATTTTCTTAAAAATGTTTTACCTTTTGAAAGAGACCAAATTTTTGAAGATTTTCAATTTTTAAAATCCTGAAAAGACAATATTTTTCTTTAAAATGTTTTACCTTTTTGAAAGAGGCCAAAGTTTGAAGATTTCCAATGTCAATTTCGAAGATTTTCTGGAATAACCAGAAATATTGGCTGCAATTAAGAAGTTGAAAA...

XM_057933974.1
TCACATTTCTAAATTTGTTTTATTGCAGATGATTGAAAATATGACAATGCTTCTAAATTTAATTTTCTTAAAAATGTTTTACCTTTTGAAAGAGACCAAATTTTTGAAGATTTTCAATTTTTAAAATCCTGAAAAGACAATATTTTTCTTTAAAATGTTTTACCTTTTTGAAAGAGGCCAAAGTTTGAAGATTTCCAATGTCAATTTCGAAGATTTTCTGGAATAACCAGAAATATTGGCTGCAATTAAGAAGTTGAAAA...

CDS

4 records

下载 CDS FASTA

LOC131006819
ATGAGAGAAGATACATGTGAGATGCACCATGAAGATGATAAAGTTCTTTCAGAGAAGAACAAGAAAAGGATAGTGAAGACACATGCTCAGGTTCAAGCATTGGAGAAATTTTACAATGAGCATAAATACCCTTCAGAGTCAATGAAAATACAACTTGCAGAGTCCATAGGTTTGACAGAGAAGCAAGTTTCTGGATGGTTTTGCCATAGGAGGTTGAAAGATAAGAAGTTAATCAATGGAGAAAACCATGCCACTGTAAG...

Protein

4 records

下载 Protein FASTA

XP_057789955.1
MREDTCEMHHEDDKVLSEKNKKRIVKTHAQVQALEKFYNEHKYPSESMKIQLAESIGLTEKQVSGWFCHRRLKDKKLINGENHATVRQDRSSGVIQDRGSGHRQDSCGSTKQGDDKNLDTREVESGRLTSKEFSAADLTYEHDSHYAGNYNHTNDDSSGSSSSLRNVPPNYQNGDPSDAATSRYLIPKLPSDVKGVKTRPGPSGYLKLKGRLENPAITAVKRQLGKHYRDDGPPLGVEFDSLPPGAFESSMQEPVEENYH...

XP_057789956.1
MREDTCEMHHEDDKVLSEKNKKRIVKTHAQVQALEKFYNEHKYPSESMKIQLAESIGLTEKQVSGWFCHRRLKDKKLINGENHATVRQDRSSGVIQDRGSGHRQDSCGSTKQGDDKNLDTREVESGRLTSKEFSAADLTYEHDSHYAGNYNHTNDDSSGSSSSLRNVPPNYQNGDPSDAATSRYLIPKLPSDVKGVKTRPGPSGYLKLKGRLENPAITAVKRQLGKHYRDDGPPLGVEFDSLPPGAFESSMQEPVEENYH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器