Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000831`

染色体: Chr01 坐标: 17909803-17914067 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000831`
名称	SmilChr01G000831
描述	serine--glyoxylate aminotransferase
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	17909803 - 17914067 / `-`

ID 对照

NCBI Gene ID	`LOC131006822`
GeneID	`131006822`
locus_tag	`-`
NCBI Name	`LOC131006822`
原始查询	`LOC131006822`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine--glyoxylate aminotransferase
产物	serine--glyoxylate aminotransferase
Arabidopsis	`AT2G13360` (AGT) alanine:glyoxylate aminotransferase [Source:NCBI gene (formerly Entrezgene);Acc:815822] identity=84.8; qcov=1; evalue=0; confidence=high
Rice	`Os08g0502700` - identity=89.2; qcov=0.998; evalue=0; confidence=high
GO	GO:0004760 (L-serine:pyruvate transaminase activity); GO:0005777 (peroxisome); GO:0008453 (L-alanine:glyoxylate transaminase activity); GO:0019265 (GO:0019265)
KEGG	smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00266 (Aminotran_5)
InterPro	-
eggNOG	-
NR	GeneID:131006822

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Peroxisome	过氧化物酶体	1.00000	`XP_057789961.1`
2	Cytosol	细胞质基质	1.00000	`XP_057789962.1`
3	Cytoplasm	细胞质	0.60000	`XP_057789962.1`
4	Mitochondrion	线粒体	0.20000	`XP_057789962.1`
5	Mitochondrion matrix	线粒体基质	0.20000	`XP_057789962.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:17910020`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B78,C39,D7
`Chr1:17911743`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C16
`Chr1:17911796`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B27,D10
`Chr1:17911989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B44,B93,C64,C66,C87
`Chr1:17912106`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B50
`Chr1:17912169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr1:17912190`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C16,D10
`Chr1:17912365`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C40
`Chr1:17912365`	`TC`	`T`	1bp_deletion	CDS_variant	1	C40
`Chr1:17912548`	`AT`	`A`	1bp_deletion	frameshift_variant	5	B136,B52,B53,C14,C2
`Chr1:17912548`	`AT`	`A`	1bp_deletion	CDS_variant	5	B136,B52,B53,C14,C2
`Chr1:17912859`	`AG`	`A`	1bp_deletion	frameshift_variant	172	A1,A11,A14,A15,A16,A18,A19,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A8,A9,B1,B10,B100,B102,B103,B106,B107,B108,B11,B111,B112,B113,B115,B117,B118,B122,B123,B124,B125,B126,B128,B13,B131,B132,B133,B135,B136,B138,B139,B14,B140,B15,B16,B18,B20,B21,B22,B24,B25,B27,B28,B29,B3,B30,B31,B34,B37,B40,B45,B47,B5,B52,B53,B54,B55,B56,B58,B59,B6,B60,B61,B63,B64,B65,B67,B68,B7,B70,B71,B73,B74,B77,B79,B8,B80,B81,B82,B83,B84,B85,B86,B88,B90,B91,B92,B94,B95,B96,B97,B98,C1,C11,C13,C14,C17,C18,C2,C21,C24,C25,C26,C28,C3,C31,C32,C33,C35,C36,C37,C39,C4,C40,C41,C42,C43,C44,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C55,C57,C58,C61,C64,C66,C68,C69,C70,C71,C72,C75,C80,C82,C83,C84,C85,C86,C9,D11,D2,D3,D4,D6,D7,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789961.1

442 aa

221

442

Aminotran_5

PF00266 Aminotran_5 116-340 aa

XP_057789962.1

401 aa

200

401

Aminotran_5

PF00266 Aminotran_5 16-299 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789961.1`	Pfam	`PF00266`	Aminotran_5	Domain	116	340	5.1e-22	79.1	Aminotransferase class-V
`XP_057789962.1`	Pfam	`PF00266`	Aminotran_5	Domain	16	299	1.3e-22	81.1	Aminotransferase class-V

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057933979.1
AGCTTCTAATATTTTTTTATTAATTCAAATTTATAGGGAGCCTTCGGATAAGGAAAAAAAAAAAAAGGATTCAATTTTTTTTTCAATGTAACAGTAATTATATTTTGGGGCTACGCACACAAGCACTCCTTAATTAATTATCTCACTCCGTGTCACAATTGTTGGATTGTTATGTAATTCATTTATTATTTAATTTAGAAATAGTGGAGGCCGATTTGGAATATAAGAAGAAAATGAGGGTATGAGTAGAAAGGGAGAAG...

XM_057933978.1
TAACAATGGTGTGCCTCTTATCTGCCACGTAAGAGGTTCGATGTGGGACCCGCGTGATTAGTCTCCCGCCTCTTATAAAATTTTATACTAACTCTCTCTGTCCTTCATTTTTGGGTTCTCTCCCTCTCTCTCTCTCTGCAGATTTTCCCACTTTCGCACACAGGGAGAGTTTAGAAAGATGGATTACGTGAATGGGCCGGGAAGGAACCACCTGTTCGTTCCGGGGCCTGTGAATATCCCCGATCAGGTGATTCGAGCAA...

CDS

2 records

下载 CDS FASTA

LOC131006822
ATGGATTACGTGAATGGGCCGGGAAGGAACCACCTGTTCGTTCCGGGGCCTGTGAATATCCCCGATCAGGTGATTCGAGCAATGAGCAGAAACAACGAGGACTACCGCTCTCCGGCCATCCCAGCTCTCACTAAAACATTGCTCGAGGACGTCAAGAAGATCTTCAAGACCACCTCTGGAACTCCTTTTCTCATTCCCACTACAGGGACGGGTGCATGGGAGAGCGCGCTGACGAACACACTGTCACCGGGCGACCGCAT...

LOC131006822
ATGGATTACGTGAATGGGCCGGGAAGGAACCACCTGTTCGTTCCGGGGCCTGTGAATATCCCCGATCAGGTGATTCGAGCAATGAGCAGAAACAACGAGGACTACCGCTCTCCGGCCATCCCAGCTCTCACTAAAACATTGCTCGAGGACGTCAAGAAGATCTTCAAGACCACCTCTGGAACTCCTTTTCTCATTCCCACTACAGGTTACTTGCTCTCTCTTTCATGCATATATACTTGTTCTATGCTACAACATATACA...

Protein

2 records

下载 Protein FASTA

XP_057789961.1
MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLIPTTGYLLSLSCIYTCSMLQHIHMHLFHCEIGASYSKAHIENGSAGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGRGADLDALAAKIAEDKAHTIKAICIVHNETATGVTNNLATVRKILDRYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASGKAL...

XP_057789962.1
MDYVNGPGRNHLFVPGPVNIPDQVIRAMSRNNEDYRSPAIPALTKTLLEDVKKIFKTTSGTPFLIPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQQRLNFNVDVVESEWGRGADLDALAAKIAEDKAHTIKAICIVHNETATGVTNNLATVRKILDRYQHPALFLVDGVSSICALDFRMDEWGVDVALTGSQKALSLPTGIGIVCASGKALEASKTAKSVRVFFDWKDYLKFYKMGTYWPYTPSIQLLYGLR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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