当前解析结果
SmilChr01G000838| 统一新 Gene ID | SmilChr01G000838 |
|---|---|
| 名称 | SmilChr01G000838 |
| 描述 | uncharacterized SmilChr01G000838 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 18104236 - 18112241 / - |
| NCBI Gene ID | LOC131006829 |
|---|---|
| GeneID | 131006829 |
| locus_tag | - |
| NCBI Name | LOC131006829 |
| 原始查询 | LOC131006829 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 2-oxoglutarate dehydrogenase, E1 component [Source:NCBI gene (formerly Entrezgene);Acc:836704]; symbol=AT5G65750; hit=AT5G65750; species=arabidopsis; confidence=high |
| 产物 | 2-oxoglutarate dehydrogenase, E1 component [Source:NCBI gene (formerly Entrezgene);Acc:836704]; symbol=AT5G65750; hit=AT5G65750; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G65750 (AT5G65750)2-oxoglutarate dehydrogenase, E1 component [Source:NCBI gene (formerly Entrezgene);Acc:836704] identity=85.4; qcov=1; evalue=0; confidence=high |
| Rice | Os04g0390000- identity=84; qcov=1; evalue=0; confidence=high |
| GO | GO:0004591 (oxoglutarate dehydrogenase (succinyl-transferring) activity); GO:0005739 (mitochondrion); GO:0006099 (tricarboxylic acid cycle); GO:0030976 (thiamine pyrophosphate binding); GO:0045252 (oxoglutarate dehydrogenase complex) |
| KEGG | smil00020 (Citrate cycle (TCA cycle) - Salvia miltiorrhiza (redroot sage)); smil00785 (Lipoic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00676 (E1_dh); PF02779 (Transket_pyr); PF16078 (2-oxogl_dehyd_N); PF16870 (OxoGdeHyase_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006829 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057789971.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 1.00000 | XP_057789971.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789971.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789971.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789971.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:18104526 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr1:18104569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A1,B3,B86 |
Chr1:18104661 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B78,C39,D11 |
Chr1:18104955 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | C74 |
Chr1:18104955 |
TA |
T |
1bp_deletion | CDS_variant | 1 | C74 |
Chr1:18108162 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B54 |
Chr1:18108162 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B54 |
Chr1:18108995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr1:18109262 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B78,C39,D11,D7 |
Chr1:18110288 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C15,C56 |
Chr1:18110730 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr1:18110824 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B78,C39,D11,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789971.1PF16078
2-oxogl_dehyd_N 64-101 aa
PF00676
E1_dh 245-565 aa
PF02779
Transket_pyr 635-848 aa
PF16870
OxoGdeHyase_C 871-1012 aa
XP_057789973.1PF16078
2-oxogl_dehyd_N 64-101 aa
PF00676
E1_dh 245-565 aa
PF02779
Transket_pyr 635-848 aa
PF16870
OxoGdeHyase_C 871-1012 aa
XP_057789974.1PF16078
2-oxogl_dehyd_N 64-101 aa
PF00676
E1_dh 245-565 aa
PF02779
Transket_pyr 635-848 aa
PF16870
OxoGdeHyase_C 871-1012 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789971.1 |
Pfam | PF16078 |
2-oxogl_dehyd_N | Family | 64 | 101 | 3.5e-15 | 56.0 | 2-oxoglutarate dehydrogenase N-terminus |
XP_057789971.1 |
Pfam | PF00676 |
E1_dh | Domain | 245 | 565 | 8.5e-59 | 199.7 | Dehydrogenase E1 component |
XP_057789971.1 |
Pfam | PF02779 |
Transket_pyr | Domain | 635 | 848 | 8e-50 | 169.6 | Transketolase, pyrimidine binding domain |
XP_057789971.1 |
Pfam | PF16870 |
OxoGdeHyase_C | Family | 871 | 1012 | 2.5e-49 | 167.6 | 2-oxoglutarate dehydrogenase C-terminal |
XP_057789973.1 |
Pfam | PF16078 |
2-oxogl_dehyd_N | Family | 64 | 101 | 3.5e-15 | 56.0 | 2-oxoglutarate dehydrogenase N-terminus |
XP_057789973.1 |
Pfam | PF00676 |
E1_dh | Domain | 245 | 565 | 8.5e-59 | 199.7 | Dehydrogenase E1 component |
XP_057789973.1 |
Pfam | PF02779 |
Transket_pyr | Domain | 635 | 848 | 8e-50 | 169.6 | Transketolase, pyrimidine binding domain |
XP_057789973.1 |
Pfam | PF16870 |
OxoGdeHyase_C | Family | 871 | 1012 | 2.5e-49 | 167.6 | 2-oxoglutarate dehydrogenase C-terminal |
XP_057789974.1 |
Pfam | PF16078 |
2-oxogl_dehyd_N | Family | 64 | 101 | 3.5e-15 | 56.0 | 2-oxoglutarate dehydrogenase N-terminus |
XP_057789974.1 |
Pfam | PF00676 |
E1_dh | Domain | 245 | 565 | 8.5e-59 | 199.7 | Dehydrogenase E1 component |
XP_057789974.1 |
Pfam | PF02779 |
Transket_pyr | Domain | 635 | 848 | 8e-50 | 169.6 | Transketolase, pyrimidine binding domain |
XP_057789974.1 |
Pfam | PF16870 |
OxoGdeHyase_C | Family | 871 | 1012 | 2.5e-49 | 167.6 | 2-oxoglutarate dehydrogenase C-terminal |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。