当前解析结果
SmilChr01G000841| 统一新 Gene ID | SmilChr01G000841 |
|---|---|
| 名称 | SmilChr01G000841 |
| 描述 | glutathione gamma-glutamylcysteinyltransferase 1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 18267989 - 18271710 / - |
| NCBI Gene ID | LOC131006830 |
|---|---|
| GeneID | 131006830 |
| locus_tag | - |
| NCBI Name | LOC131006830 |
| 原始查询 | LOC131006830 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutathione gamma-glutamylcysteinyltransferase 1-like |
| 产物 | glutathione gamma-glutamylcysteinyltransferase 1-like |
| Arabidopsis | AT5G44070 (CAD1)phytochelatin synthase 1 (PCS1) [Source:NCBI gene (formerly Entrezgene);Acc:834430] identity=73.7; qcov=0.931; evalue=1.95e-128; confidence=high |
| Rice | Os06g0102300 (OsPCS2b)- identity=69.7; qcov=0.943; evalue=6.64e-125; confidence=high |
| GO | GO:0010038 (response to metal ion); GO:0010273 (detoxification of copper ion); GO:0016756 (glutathione gamma-glutamylcysteinyltransferase activity); GO:0046872 (metal ion binding); GO:0046938 (phytochelatin biosynthetic process); GO:0098849 (cellular detoxification of cadmium ion) |
| KEGG | - |
| Pfam | PF05023 (Phytochelatin) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006830 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057789975.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057789975.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057789975.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057789975.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057789975.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:18268095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:18268100 |
A |
AC |
1bp_insertion | frameshift_variant | 3 | A1,B75,C87 |
Chr1:18268100 |
A |
AC |
1bp_insertion | CDS_variant | 3 | A1,B75,C87 |
Chr1:18268117 |
TC |
T |
1bp_deletion | frameshift_variant | 4 | A1,B86,C5,C55 |
Chr1:18268117 |
TC |
T |
1bp_deletion | CDS_variant | 4 | A1,B86,C5,C55 |
Chr1:18268130 |
G |
A |
EMS_canonical_SNV | stop_gained | 130 | A11,A13,A18,A2,A20,A25,A3,A4,B1,B10,B100,B102,B106,B108,B109,B11,B110,B112,B113,B115,B118,B123,B124,B127,B128,B129,B130,B131,B132,B136,B138,B139,B16,B17,B2,B24,B25,B26,B27,B28,B30,B31,B34,B41,B42,B43,B44,B45,B46,B47,B52,B53,B57,B6,B61,B62,B64,B66,B7,B72,B73,B74,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B88,B89,B90,B92,B94,B95,B97,C1,C10,C13,C14,C16,C2,C21,C22,C23,C27,C28,C30,C31,C32,C33,C38,C4,C41,C44,C45,C46,C5,C50,C52,C53,C56,C57,C58,C63,C64,C65,C66,C67,C68,C7,C70,C71,C72,C73,C75,C8,C80,C81,C83,C86,D11,D3,D4,D6,D7,D9 |
Chr1:18268153 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C12,C31,D1 |
Chr1:18268168 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A1,C87 |
Chr1:18268613 |
CA |
C |
1bp_deletion | frameshift_variant | 56 | A11,A25,A3,A5,B100,B106,B107,B109,B110,B111,B117,B118,B120,B132,B133,B134,B135,B136,B140,B21,B22,B23,B24,B26,B29,B33,B38,B40,B42,B43,B49,B5,B79,B80,B82,B84,B86,B90,B92,B94,B97,C10,C12,C27,C28,C38,C49,C56,C65,C7,C73,C8,C85,C87,D1,D9 |
Chr1:18268715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B126,B75,C46 |
Chr1:18268718 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | B2 |
Chr1:18268718 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057789975.1PF05023
Phytochelatin 7-214 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057789975.1 |
Pfam | PF05023 |
Phytochelatin | Domain | 7 | 214 | 3.1e-89 | 298.5 | Phytochelatin synthase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。