Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000858`

染色体: Chr01 坐标: 18484644-18491875 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000858`
名称	SmilChr01G000858
描述	histidine kinase CKI1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	18484644 - 18491875 / `+`

ID 对照

NCBI Gene ID	`LOC131006844`
GeneID	`131006844`
locus_tag	`-`
NCBI Name	`LOC131006844`
原始查询	`LOC131006844`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histidine kinase CKI1-like
产物	histidine kinase CKI1-like
Arabidopsis	`AT2G47430` (CKI1) Signal transduction histidine kinase [Source:NCBI gene (formerly Entrezgene);Acc:819356] identity=36.8; qcov=1.14; evalue=0; confidence=medium
Rice	`Os06g0183200` (HK2) - identity=37; qcov=0.689; evalue=1.23e-114; confidence=medium
GO	GO:0000155 (phosphorelay sensor kinase activity); GO:0000160 (phosphorelay signal transduction system); GO:0005634 (nucleus); GO:0016310 (phosphorylation)
KEGG	-
Pfam	PF00072 (Response_reg); PF00512 (HisKA); PF02518 (HATPase_c)
InterPro	-
eggNOG	-
NR	GeneID:131006844

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057789986.1`
2	Cell membrane	细胞膜	0.20000	`XP_057789986.1`
3	Vacuole	液泡	0.20000	`XP_057789986.1`
4	Nucleus	细胞核	0.00000	`XP_057789986.1`
5	Chromosome	染色体	0.00000	`XP_057789986.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:18488462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C87,D10
`Chr1:18488471`	`A`	`AT`	1bp_insertion	frameshift_variant	47	A2,A23,A4,B1,B100,B106,B11,B113,B131,B132,B133,B20,B27,B28,B30,B34,B36,B52,B6,B8,B80,B81,B82,B84,B95,B97,C1,C22,C31,C32,C33,C4,C41,C45,C46,C53,C6,C62,C64,C66,C68,C72,C81,C86,D3,D4,D9
`Chr1:18488518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A4,B47
`Chr1:18488610`	`T`	`TC`	1bp_insertion	frameshift_variant	1	B50
`Chr1:18488610`	`T`	`TC`	1bp_insertion	CDS_variant	1	B50
`Chr1:18488829`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:18488994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B32,C11,C69
`Chr1:18489061`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:18489091`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:18489094`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,C12
`Chr1:18489112`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr1:18489168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057789986.1

986 aa

493

986

HisKA

HATPase_c

Response_reg

PF00512 HisKA 400-469 aa PF02518 HATPase_c 519-663 aa PF00072 Response_reg 859-979 aa

XP_057789987.1

986 aa

493

986

HisKA

HATPase_c

Response_reg

PF00512 HisKA 400-469 aa PF02518 HATPase_c 519-663 aa PF00072 Response_reg 859-979 aa

XP_057789988.1

986 aa

493

986

HisKA

HATPase_c

Response_reg

PF00512 HisKA 400-469 aa PF02518 HATPase_c 519-663 aa PF00072 Response_reg 859-979 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057789986.1`	Pfam	`PF00512`	HisKA	Domain	400	469	8.5e-08	32.9	His Kinase A (phospho-acceptor) domain
`XP_057789986.1`	Pfam	`PF02518`	HATPase_c	Domain	519	663	2.1e-20	73.9	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057789986.1`	Pfam	`PF00072`	Response_reg	Domain	859	979	1.3e-18	67.9	Response regulator receiver domain
`XP_057789987.1`	Pfam	`PF00512`	HisKA	Domain	400	469	8.5e-08	32.9	His Kinase A (phospho-acceptor) domain
`XP_057789987.1`	Pfam	`PF02518`	HATPase_c	Domain	519	663	2.1e-20	73.9	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057789987.1`	Pfam	`PF00072`	Response_reg	Domain	859	979	1.3e-18	67.9	Response regulator receiver domain
`XP_057789988.1`	Pfam	`PF00512`	HisKA	Domain	400	469	8.5e-08	32.9	His Kinase A (phospho-acceptor) domain
`XP_057789988.1`	Pfam	`PF02518`	HATPase_c	Domain	519	663	2.1e-20	73.9	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
`XP_057789988.1`	Pfam	`PF00072`	Response_reg	Domain	859	979	1.3e-18	67.9	Response regulator receiver domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057934004.1
TACAGCCGCTCCCCTCCCCCTTCATTCTCGTCTCTCTCTGTTCTCACAAAACACACACACACAGAGCACGCTGGCACCGGCGACACCGCCGTCGCCTCTCCAGCCTCGTCTTTTCCTCCACCGCCTGACACCCCCACACAACGCAGAACTCTCCCTCTCTCTCAAAGCTTACGACACGCACAACGCAGCCACGCAGCAGCGCGGCTTCGCCCTAAACTCCGGCGACATCGCCGTCGAGCCTGAAGGTCATAATCACATAT...

XM_057934003.1
TACAGCCGCTCCCCTCCCCCTTCATTCTCGTCTCTCTCTGTTCTCACAAAACACACACACACAGAGCACGCTGGCACCGGCGACACCGCCGTCGCCTCTCCAGCCTCGTCTTTTCCTCCACCGCCTGACACCCCCACACAACGCAGAACTCTCCCTCTCTCTCAAAGCTTACGACACGCACAACGCAGCCACGCAGCAGCGCGGCTTCGCCCTAAACTCCGGCGACATCGCCGTCGAGCCTGAAGGTCATAATCACATAT...

CDS

3 records

下载 CDS FASTA

LOC131006844
ATGAAGCAAAATTCGTTGATAGTGTTGCGTCCCGTTTGTTTCTTCATTTTCATGATACTTGTGGTGCTGTCTTTGGCTGGTCTGTTGATCACAATATGGTTCAACAAAGTCGCAACAGTCGAAAAGGAAGTGAAGTTGATAGCACACAACATCCATCAACATTTCATATCTGAAATTCACAATGCAGCTGCATTCTTCTTTCCCAACAATGCTTCAGCCATCAACTTTGCCCGAATTTTGGGTTTCTCTTTGGATAATAA...

Protein

3 records

下载 Protein FASTA

XP_057789986.1
MKQNSLIVLRPVCFFIFMILVVLSLAGLLITIWFNKVATVEKEVKLIAHNIHQHFISEIHNAAAFFFPNNASAINFARILGFSLDNNNNLPFPNIESKVAPALFQAFSTIPYLSQISYIGLNGLLFAYGKDEDEPYALYSNSTFPARKDAEEKYTWYLQPANRDTGKLYGEATKFPAPALVKASWLQGALNSTNGYASVGTGWRNLPQDVLLLNTIRLDGNGVISLGFRMKPLIDFLVAQMGYHDGSMYLVTTDWDLAIQ...

XP_057789987.1
MKQNSLIVLRPVCFFIFMILVVLSLAGLLITIWFNKVATVEKEVKLIAHNIHQHFISEIHNAAAFFFPNNASAINFARILGFSLDNNNNLPFPNIESKVAPALFQAFSTIPYLSQISYIGLNGLLFAYGKDEDEPYALYSNSTFPARKDAEEKYTWYLQPANRDTGKLYGEATKFPAPALVKASWLQGALNSTNGYASVGTGWRNLPQDVLLLNTIRLDGNGVISLGFRMKPLIDFLVAQMGYHDGSMYLVTTDWDLAIQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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