Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000891`

染色体: Chr01 坐标: 18955984-18963499 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000891`
名称	SmilChr01G000891
描述	ubiquitin carboxyl-terminal hydrolase 24-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	18955984 - 18963499 / `+`

ID 对照

NCBI Gene ID	`LOC131006871`
GeneID	`131006871`
locus_tag	`-`
NCBI Name	`LOC131006871`
原始查询	`LOC131006871`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin carboxyl-terminal hydrolase 24-like
产物	ubiquitin carboxyl-terminal hydrolase 24-like
Arabidopsis	`AT4G30890` (UBP24) ubiquitin-specific protease 24 [Source:NCBI gene (formerly Entrezgene);Acc:829213] identity=50.8; qcov=1.01; evalue=1.65e-172; confidence=high
Rice	`Os07g0661300` - identity=52.3; qcov=0.794; evalue=1.47e-160; confidence=high
GO	GO:0004197 (cysteine-type endopeptidase activity); GO:0004843 (cysteine-type deubiquitinase activity); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0016579 (protein deubiquitination)
KEGG	-
Pfam	PF00443 (UCH); PF13423 (UCH_1)
InterPro	-
eggNOG	-
NR	GeneID:131006871

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057790004.1`
2	Cytosol	细胞质基质	0.80000	`XP_057790004.1`
3	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057790004.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.40000	`XP_057790004.1`
5	P-body	P-body	0.40000	`XP_057790004.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:18956567`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B126,C83
`Chr1:18958005`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr1:18958477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr1:18958676`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,B23,D11
`Chr1:18959635`	`GTC`	`G`	2bp_deletion	frameshift_variant	11	A16,B140,B29,B48,B63,B78,C1,C14,C40,D5,D7
`Chr1:18959686`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B126,C83
`Chr1:18963013`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A3,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790004.1

600 aa

300

600

UCH

UCH_1

PF00443 UCH 248-597 aa PF13423 UCH_1 347-577 aa

XP_057790005.1

578 aa

289

578

UCH

UCH_1

PF00443 UCH 226-575 aa PF13423 UCH_1 325-555 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790004.1`	Pfam	`PF00443`	UCH	Family	248	597	5.5e-48	164.5	Ubiquitin carboxyl-terminal hydrolase
`XP_057790004.1`	Pfam	`PF13423`	UCH_1	Domain	347	577	1.7e-07	32.0	Ubiquitin carboxyl-terminal hydrolase
`XP_057790005.1`	Pfam	`PF00443`	UCH	Family	226	575	5e-48	164.6	Ubiquitin carboxyl-terminal hydrolase
`XP_057790005.1`	Pfam	`PF13423`	UCH_1	Domain	325	555	1.5e-07	32.1	Ubiquitin carboxyl-terminal hydrolase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934022.1
CGGCACCCTCTACAACGAAAAACCTAAACCTCAACTGCATATAGAGAGCAATAGAAAATCAAATCTCCCAAACAAATTGAATTTGAGTTGTATTAGGTCGATGCTTCTTCTCGAGGTGCGAACTCTTGTTTCTCTCACATGTCTTCTTCAATCTTCGCTCTTTTCCCTCTCACCTCTCAAAATAAATACCCTCATAAATCCTTAATTCTTTTCAGCAGATATCCCAAACGTTTTCTTCTTTATATCATATCACAGAATCT...

XM_057934021.1
GGCACCCTCTACAACGAAAAACCTAAACCTCAACTGCATATAGAGAGCAATAGAAAATCAAATCTCCCAAACAAATTGAATTTGAGTTGTATTAGGTCGATGCTTCTTCTCGAGGTGCGAACTCTTGTTTCTCTCACATGTCTTCTTCAATCTTCGCTCTTTTCCCTCTCACCTCTCAAAATAAATACCCTCATAAATCCTTAATTCTTTTCAGCAGATATCCCAAACGTTTTCTTCTTTATATCATATCACAGAATCTT...

CDS

2 records

下载 CDS FASTA

LOC131006871
ATGAGTGATCCTTCCAAGGGCTATCTAGTGTTTTGGGTCTGGAGTAGGATGTCGTTAGAAAGACCCCCCAAATTGACTACAAAGGTATTGCTTTTTGGATCATTTTCTGAGGATGAAACTCGTTCTTTGCTAAATCAAAAACCTTCCAATGCCCATAAACCTGAAGAAAGGAAAGAATCGTCAGTCAATCTCCCAAATCTGGGATTAATGTTTGGTAGCTTTAGTGATATACCTGACACACAGGTTGGTTTTCCTAGTGG...

LOC131006871
ATGAGTGATCCTTCCAAGGTATTGCTTTTTGGATCATTTTCTGAGGATGAAACTCGTTCTTTGCTAAATCAAAAACCTTCCAATGCCCATAAACCTGAAGAAAGGAAAGAATCGTCAGTCAATCTCCCAAATCTGGGATTAATGTTTGGTAGCTTTAGTGATATACCTGACACACAGGTTGGTTTTCCTAGTGGACCTGGAGATACAAACCCCTCCACCATCCAGAAGGGCAACCAGCAATTCATTCAGAAACCAGCTAC...

Protein

2 records

下载 Protein FASTA

XP_057790004.1
MSDPSKGYLVFWVWSRMSLERPPKLTTKVLLFGSFSEDETRSLLNQKPSNAHKPEERKESSVNLPNLGLMFGSFSDIPDTQVGFPSGPGDTNPSTIQKGNQQFIQKPATETLPIPSVSTIQKGNQQFIQKPATETLPVPSVSTIQKGNQQFIQKPASETLPIPSVNGNVKNSTHYVHGNEVVVGSNFRALQVSDDNDKIDGKIIPEIRDYEGLKLNGTVNAAAVETHHKEAHLKTDVPILDAQGITPRGLVNSGNLCFLN...

XP_057790005.1
MSDPSKVLLFGSFSEDETRSLLNQKPSNAHKPEERKESSVNLPNLGLMFGSFSDIPDTQVGFPSGPGDTNPSTIQKGNQQFIQKPATETLPIPSVSTIQKGNQQFIQKPATETLPVPSVSTIQKGNQQFIQKPASETLPIPSVNGNVKNSTHYVHGNEVVVGSNFRALQVSDDNDKIDGKIIPEIRDYEGLKLNGTVNAAAVETHHKEAHLKTDVPILDAQGITPRGLVNSGNLCFLNATLQALLACSPFVQLLLGLRKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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