当前解析结果
SmilChr01G000892| 统一新 Gene ID | SmilChr01G000892 |
|---|---|
| 名称 | SmilChr01G000892 |
| 描述 | uncharacterized SmilChr01G000892 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 18964249 - 18978358 / - |
| NCBI Gene ID | LOC131006872 |
|---|---|
| GeneID | 131006872 |
| locus_tag | - |
| NCBI Name | LOC131006872 |
| 原始查询 | LOC131006872 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription coactivator [Source:NCBI gene (formerly Entrezgene);Acc:844068]; symbol=MEI1; hit=AT1G77320; species=arabidopsis; confidence=high |
| 产物 | transcription coactivator [Source:NCBI gene (formerly Entrezgene);Acc:844068]; symbol=MEI1; hit=AT1G77320; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G77320 (MEI1)transcription coactivator [Source:NCBI gene (formerly Entrezgene);Acc:844068] identity=45.6; qcov=1.07; evalue=0; confidence=high |
| Rice | Os11g0191300- identity=42.6; qcov=0.972; evalue=0; confidence=medium |
| GO | GO:0006270 (DNA replication initiation); GO:0007095 (mitotic G2 DNA damage checkpoint signaling); GO:0033314 (mitotic DNA replication checkpoint signaling) |
| KEGG | smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00533 (BRCT); PF12738 (PTCB-BRCT) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006872 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790006.1 |
| 2 | Chromosome | 染色体 | 0.80000 | XP_057790006.1 |
| 3 | Nucleoplasm | 核质 | 0.60000 | XP_057790006.1 |
| 4 | PML body | PML body | 0.20000 | XP_057790006.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057790006.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:18966782 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr1:18967102 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr1:18967168 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr1:18970981 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr1:18971207 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A4,B103 |
Chr1:18972164 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr1:18972208 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr1:18973448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B84 |
Chr1:18978124 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B125,B2,B90,B92 |
Chr1:18978208 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:18978216 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790006.1PF00533
BRCT 99-170 aa
PF12738
PTCB-BRCT 103-165 aa
PF00533
BRCT 184-257 aa
PF12738
PTCB-BRCT 189-252 aa
PF00533
BRCT 371-445 aa
PF00533
BRCT 533-604 aa
PF00533
BRCT 633-702 aa
PF12738
PTCB-BRCT 637-698 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790006.1 |
Pfam | PF00533 |
BRCT | Domain | 99 | 170 | 3.6e-51 | 172.0 | BRCA1 C Terminus (BRCT) domain |
XP_057790006.1 |
Pfam | PF12738 |
PTCB-BRCT | Domain | 103 | 165 | 6.5e-59 | 196.5 | twin BRCT domain |
XP_057790006.1 |
Pfam | PF00533 |
BRCT | Domain | 184 | 257 | 3.6e-51 | 172.0 | BRCA1 C Terminus (BRCT) domain |
XP_057790006.1 |
Pfam | PF12738 |
PTCB-BRCT | Domain | 189 | 252 | 6.5e-59 | 196.5 | twin BRCT domain |
XP_057790006.1 |
Pfam | PF00533 |
BRCT | Domain | 371 | 445 | 3.6e-51 | 172.0 | BRCA1 C Terminus (BRCT) domain |
XP_057790006.1 |
Pfam | PF00533 |
BRCT | Domain | 533 | 604 | 3.6e-51 | 172.0 | BRCA1 C Terminus (BRCT) domain |
XP_057790006.1 |
Pfam | PF00533 |
BRCT | Domain | 633 | 702 | 3.6e-51 | 172.0 | BRCA1 C Terminus (BRCT) domain |
XP_057790006.1 |
Pfam | PF12738 |
PTCB-BRCT | Domain | 637 | 698 | 6.5e-59 | 196.5 | twin BRCT domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。