当前解析结果
SmilChr01G000933| 统一新 Gene ID | SmilChr01G000933 |
|---|---|
| 名称 | SmilChr01G000933 |
| 描述 | protein transport protein SEC31 homolog B-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 19775261 - 19786182 / - |
| NCBI Gene ID | LOC131006885 |
|---|---|
| GeneID | 131006885 |
| locus_tag | - |
| NCBI Name | LOC131006885 |
| 原始查询 | LOC131006885 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein transport protein SEC31 homolog B-like |
| 产物 | protein transport protein SEC31 homolog B-like |
| Arabidopsis | AT3G63460 (AT3G63460)transducin family protein / WD-40 repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:825521] identity=59.4; qcov=1.02; evalue=0; confidence=high |
| Rice | Os07g0657200 (OsWD40-148)- identity=55.3; qcov=1.04; evalue=0; confidence=high |
| GO | GO:0005198 (structural molecule activity); GO:0005515 (protein binding); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0007029 (endoplasmic reticulum organization); GO:0030127 (COPII vesicle coat); GO:0070971 (endoplasmic reticulum exit site); GO:0090110 (COPII-coated vesicle cargo loading) |
| KEGG | smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00400 (WD40); PF12931 (TPR_Sec16) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006885 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057790015.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057790015.1 |
| 3 | Cytoplasmic vesicle | 细胞质囊泡 | 0.60000 | XP_057790015.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.40000 | XP_057790015.1 |
| 5 | Clathrin-coated vesicle | Clathrin-coated vesicle | 0.20000 | XP_057790015.1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057790015.1PF00400
WD40 123-157 aa
PF00400
WD40 260-298 aa
PF12931
TPR_Sec16 563-759 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790015.1 |
Pfam | PF00400 |
WD40 | Repeat | 123 | 157 | 8.6e-11 | 42.6 | WD domain, G-beta repeat |
XP_057790015.1 |
Pfam | PF00400 |
WD40 | Repeat | 260 | 298 | 8.6e-11 | 42.6 | WD domain, G-beta repeat |
XP_057790015.1 |
Pfam | PF12931 |
TPR_Sec16 | Repeat | 563 | 759 | 3e-08 | 34.5 | Sec16 Sec23-binding domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。