当前解析结果
SmilChr01G000916| 统一新 Gene ID | SmilChr01G000916 |
|---|---|
| 名称 | SmilChr01G000916 |
| 描述 | uncharacterized SmilChr01G000916 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 19372169 - 19381759 / - |
| NCBI Gene ID | LOC131006888 |
|---|---|
| GeneID | 131006888 |
| locus_tag | - |
| NCBI Name | LOC131006888 |
| 原始查询 | LOC131006888 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glucose-inhibited division family A protein [Source:NCBI gene (formerly Entrezgene);Acc:815830]; symbol=AT2G13440; hit=AT2G13440; species=arabidopsis; confidence=high |
| 产物 | glucose-inhibited division family A protein [Source:NCBI gene (formerly Entrezgene);Acc:815830]; symbol=AT2G13440; hit=AT2G13440; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G13440 (AT2G13440)glucose-inhibited division family A protein [Source:NCBI gene (formerly Entrezgene);Acc:815830] identity=85.8; qcov=0.982; evalue=0; confidence=high |
| Rice | Os01g0960300- identity=82.2; qcov=0.995; evalue=0; confidence=high |
| GO | GO:0002098 (tRNA wobble uridine modification); GO:0030488 (tRNA methylation); GO:0050660 (flavin adenine dinucleotide binding) |
| KEGG | - |
| Pfam | PF01134 (GIDA); PF13932 (SAM_GIDA_C); PF21680 (GIDA_C_1st) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006888 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057790016.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057790017.1 |
| 3 | Mitochondrion matrix | 线粒体基质 | 0.20000 | XP_057790016.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057790016.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057790016.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:19372384 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | A16,B29 |
Chr1:19372384 |
G |
GT |
1bp_insertion | CDS_variant | 2 | A16,B29 |
Chr1:19372394 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr1:19372489 |
TA |
T |
1bp_deletion | frameshift_variant | 4 | A3,B8,B84,C16 |
Chr1:19372489 |
TA |
T |
1bp_deletion | CDS_variant | 4 | A3,B8,B84,C16 |
Chr1:19373041 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr1:19373101 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B139,B23,C83 |
Chr1:19373343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C25,C27 |
Chr1:19373399 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B105,C29 |
Chr1:19373533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr1:19376998 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr1:19377014 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790016.1PF01134
GIDA 83-474 aa
PF21680
GIDA_C_1st 536-630 aa
PF13932
SAM_GIDA_C 632-710 aa
XP_057790017.1PF01134
GIDA 2-356 aa
PF21680
GIDA_C_1st 418-512 aa
PF13932
SAM_GIDA_C 514-592 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790016.1 |
Pfam | PF01134 |
GIDA | Family | 83 | 474 | 7.7e-158 | 526.4 | Glucose inhibited division protein A |
XP_057790016.1 |
Pfam | PF21680 |
GIDA_C_1st | Domain | 536 | 630 | 3.9e-18 | 66.7 | tRNA modifying enzyme MnmG/GidA C-terminal helical domain |
XP_057790016.1 |
Pfam | PF13932 |
SAM_GIDA_C | Domain | 632 | 710 | 2.9e-26 | 92.1 | tRNA modifying enzyme MnmG/GidA C-terminal helical bundle |
XP_057790017.1 |
Pfam | PF01134 |
GIDA | Family | 2 | 356 | 6.3e-137 | 457.5 | Glucose inhibited division protein A |
XP_057790017.1 |
Pfam | PF21680 |
GIDA_C_1st | Domain | 418 | 512 | 3e-18 | 67.1 | tRNA modifying enzyme MnmG/GidA C-terminal helical domain |
XP_057790017.1 |
Pfam | PF13932 |
SAM_GIDA_C | Domain | 514 | 592 | 2.4e-26 | 92.4 | tRNA modifying enzyme MnmG/GidA C-terminal helical bundle |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。