Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001930`

染色体: Chr01 坐标: 34471363-34472432 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001930`
名称	SmilChr01G001930
描述	uncharacterized SmilChr01G001930
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	34471363 - 34472432 / `-`

ID 对照

NCBI Gene ID	`LOC131006921`
GeneID	`131006921`
locus_tag	`-`
NCBI Name	`LOC131006921`
原始查询	`LOC131006921`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939]; symbol=AT1G66235; hit=AT1G66235; species=arabidopsis; confidence=low
产物	no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939]; symbol=AT1G66235; hit=AT1G66235; species=arabidopsis; confidence=low
Arabidopsis	`AT1G66235` (AT1G66235) no-apical-meristem-associated carboxy-terminal domain protein [Source:NCBI gene (formerly Entrezgene);Acc:842939] identity=33.7; qcov=0.9; evalue=5.7e-49; confidence=low
Rice	`Os06g0635500` - identity=25.6; qcov=0.782; evalue=3.42e-15; confidence=low
GO	-
KEGG	-
Pfam	PF14303 (NAM-associated)
InterPro	-
eggNOG	-
NR	GeneID:131006921

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790048.1`
2	Chromosome	染色体	0.00000	`XP_057790048.1`
3	Centromere	着丝粒	0.00000	`XP_057790048.1`
4	Chromatin	染色质	0.00000	`XP_057790048.1`
5	Telomere	端粒	0.00000	`XP_057790048.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:34471363`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr1:34471373`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B119,B87
`Chr1:34471374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B38,C15
`Chr1:34471416`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B40
`Chr1:34471424`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B41,C86,D4
`Chr1:34471462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr1:34471472`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B42,B73
`Chr1:34471481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B26,B29,C5
`Chr1:34471483`	`AC`	`A`	1bp_deletion	frameshift_variant	1	C15
`Chr1:34471483`	`AC`	`A`	1bp_deletion	CDS_variant	1	C15
`Chr1:34471487`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A4,B108,B140,C26
`Chr1:34471491`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A8,B93,C46,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790048.1

330 aa

165

330

NAM-associated

PF14303 NAM-associated 114-282 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790048.1`	Pfam	`PF14303`	NAM-associated	Family	114	282	2.2e-16	61.8	No apical meristem-associated C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934065.1
ATGGCTTCTTCTCGACAGCCTAATTACACAATTGATGAAGATAAACATCTTTGTCGTGTGTATTTGGAGATATCTCAAGATTCAGAAACGGGAATACAACAAAGAAAAGAAAATTTTTGGGATCGTATTAGGGAGGTTTACAACGAGGAGAAACCCAATCCAAATATGTATACTCGAAGTTCAAGATCACTTGAAACTCGCATGCATGTTATTTTGAGTTCGGTTTCAAAACTCAAAGGGTGTATACAACAAGTGGAATA...

CDS

1 records

下载 CDS FASTA

LOC131006921
ATGGCTTCTTCTCGACAGCCTAATTACACAATTGATGAAGATAAACATCTTTGTCGTGTGTATTTGGAGATATCTCAAGATTCAGAAACGGGAATACAACAAAGAAAAGAAAATTTTTGGGATCGTATTAGGGAGGTTTACAACGAGGAGAAACCCAATCCAAATATGTATACTCGAAGTTCAAGATCACTTGAAACTCGCATGCATGTTATTTTGAGTTCGGTTTCAAAACTCAAAGGGTGTATACAACAAGTGGAATA...

Protein

1 records

下载 Protein FASTA

XP_057790048.1
MASSRQPNYTIDEDKHLCRVYLEISQDSETGIQQRKENFWDRIREVYNEEKPNPNMYTRSSRSLETRMHVILSSVSKLKGCIQQVEYLNPSGCSESDIFTRAKELMMLDTKYKKCFKFEHVWSIMKDYQKFDCPSQNSRQQMSASQSDSLPQSPISPDGLSNFSINLSDGSGSGSGSSHRPDGVKKTKNKRKKGEDMSNFLKVIEQGNKRIGDLMENSSTTKEQILQLQMQKIEAKNKATEAKKQAIAFQMWESDNKILM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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