Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G000973

染色体: Chr01 坐标: 20590675-20594808 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G000973
名称SmilChr01G000973
描述protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向20590675 - 20594808 / +

ID 对照

NCBI Gene IDLOC131006937
GeneID131006937
locus_tag-
NCBI NameLOC131006937
原始查询LOC131006937

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like
产物protein CHAPERONE-LIKE PROTEIN OF POR1%2C chloroplastic-like
ArabidopsisAT5G23040 (CDF1)
cell growth defect factor-like protein (DUF3353) [Source:NCBI gene (formerly Entrezgene);Acc:832368]
identity=72.2; qcov=0.854; evalue=1.67e-116; confidence=high
RiceOs09g0380200 (OsV5A)
-
identity=64.1; qcov=0.783; evalue=1.71e-91; confidence=high
GOGO:0031969 (chloroplast membrane)
KEGG-
PfamPF11833 (CPP1-like)
InterPro-
eggNOG-
NRGeneID:131006937

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057790055.1
2 Chloroplast membrane 叶绿体膜 1.00000 XP_057790055.1
3 Chloroplast thylakoid 类囊体 0.20000 XP_057790055.1
4 Chloroplast thylakoid membrane 类囊体膜 0.20000 XP_057790055.1
5 Nucleus 细胞核 0.00000 XP_057790055.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:20591531 C T EMS_canonical_SNV CDS_variant 1 C51
Chr1:20591564 G A EMS_canonical_SNV CDS_variant 1 B32
Chr1:20591685 G A EMS_canonical_SNV CDS_variant 2 B100,B140
Chr1:20591700 G A EMS_canonical_SNV CDS_variant 2 B104,C9
Chr1:20592164 A AT 1bp_insertion frameshift_variant 4 B100,B140,C79,D7
Chr1:20592164 A AT 1bp_insertion CDS_variant 4 B100,B140,C79,D7
Chr1:20592178 TA T 1bp_deletion frameshift_variant 1 B51
Chr1:20592178 TA T 1bp_deletion CDS_variant 1 B51
Chr1:20592197 C T EMS_canonical_SNV CDS_variant 3 B100,B140,D7
Chr1:20592255 G A EMS_canonical_SNV CDS_variant 1 B140
Chr1:20592315 C T EMS_canonical_SNV CDS_variant 1 A16
Chr1:20592437 G A EMS_canonical_SNV CDS_variant 1 C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057790055.1
253 aa
N
1
126
253
CPP1-like
C
PF11833 CPP1-like 73-252 aa
XP_057790056.1
253 aa
N
1
126
253
CPP1-like
C
PF11833 CPP1-like 73-252 aa
XP_057790057.1
253 aa
N
1
126
253
CPP1-like
C
PF11833 CPP1-like 73-252 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057790055.1 Pfam PF11833 CPP1-like Family 73 252 3.4e-59 200.5 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
XP_057790056.1 Pfam PF11833 CPP1-like Family 73 252 3.4e-59 200.5 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
XP_057790057.1 Pfam PF11833 CPP1-like Family 73 252 3.4e-59 200.5 Protein CHAPERONE-LIKE PROTEIN OF POR1-like

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057934073.1
TGGGTGGATTGGCGGTTTGGTCTGGGCGCTTGTCAACCCATACTACGTCGTTTAGGCAGTGCAGAAAACTGGGATAAGGGTTTGGAATTAAACGATTCCACTCTTAAATCGGCTAACCGCGAACCACACCACGGCCGAGTAGGGCCTCTCTCTCGCTCTAGCTTCTAATTTCACTAGAGGAGGGACTCGGATCTTGAGAACCTAATGGCAGCGGCTCTCCTCTCAACCCCTACCCTCAAAACCTCTTTCCTTGGCCGTCG...
XM_057934072.1
GGCGGTTTGGTCTGGGCGCTTGTCAACCCATACTACGTCGTTTAGGCAGTGCAGAAAACTGGGATAAGGGTTTGGAATTAAACGATTCCACTCTTAAATCGGCTAACCGCGAACCACACCACGGCCGAGTAGGGCCTCTCTCTCGCTCTAGAGGAGGGACTCGGATCTTGAGAACCTAATGGCAGCGGCTCTCCTCTCAACCCCTACCCTCAAAACCTCTTTCCTTGGCCGTCGTCTTCACAGTTCAATTCGAGGCGATT...

CDS

3 records

下载 CDS FASTA
LOC131006937
ATGGCAGCGGCTCTCCTCTCAACCCCTACCCTCAAAACCTCTTTCCTTGGCCGTCGTCTTCACAGTTCAATTCGAGGCGATTCGAGAAGAAATAACCCGGGCTATGTGGGATTTATCTCCCCAAAATGTGCAGTGGATACGCCTTATGAAGGTAGCATTTCAAAATTCCCTAGGTTGAATGTCTGGGATCCTTATAAGCGGCTGGGGGTTAGTACTGATGCTTCGGAAGAAGAAGTTTGGAGTGCTCGGAACTTTTTGTT...
LOC131006937
ATGGCAGCGGCTCTCCTCTCAACCCCTACCCTCAAAACCTCTTTCCTTGGCCGTCGTCTTCACAGTTCAATTCGAGGCGATTCGAGAAGAAATAACCCGGGCTATGTGGGATTTATCTCCCCAAAATGTGCAGTGGATACGCCTTATGAAGGTAGCATTTCAAAATTCCCTAGGTTGAATGTCTGGGATCCTTATAAGCGGCTGGGGGTTAGTACTGATGCTTCGGAAGAAGAAGTTTGGAGTGCTCGGAACTTTTTGTT...

Protein

3 records

下载 Protein FASTA
XP_057790055.1
MAAALLSTPTLKTSFLGRRLHSSIRGDSRRNNPGYVGFISPKCAVDTPYEGSISKFPRLNVWDPYKRLGVSTDASEEEVWSARNFLLDQYANHERSAESIEAAFEKLLMTSYKNRKKMKINLKSRLKKKVEESPPWVKNLLSFVEIPPPVIILRRLFLFSFMACWSVMNSAEAGPAFQVALSLGACIYFLNDKNKSLPRAAIIGFGALVAGWFCGSMTVPLVPSFLLQPTWTLELLTSLVVYVFLFLACSFLK
XP_057790056.1
MAAALLSTPTLKTSFLGRRLHSSIRGDSRRNNPGYVGFISPKCAVDTPYEGSISKFPRLNVWDPYKRLGVSTDASEEEVWSARNFLLDQYANHERSAESIEAAFEKLLMTSYKNRKKMKINLKSRLKKKVEESPPWVKNLLSFVEIPPPVIILRRLFLFSFMACWSVMNSAEAGPAFQVALSLGACIYFLNDKNKSLPRAAIIGFGALVAGWFCGSMTVPLVPSFLLQPTWTLELLTSLVVYVFLFLACSFLK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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