当前解析结果
SmilChr01G001009| 统一新 Gene ID | SmilChr01G001009 |
|---|---|
| 名称 | SmilChr01G001009 |
| 描述 | proteinaceous RNase P 2-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 21220361 - 21223520 / + |
| NCBI Gene ID | LOC131006964 |
|---|---|
| GeneID | 131006964 |
| locus_tag | - |
| NCBI Name | LOC131006964 |
| 原始查询 | LOC131006964 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | proteinaceous RNase P 2-like |
| 产物 | proteinaceous RNase P 2-like |
| Arabidopsis | AT4G21900 (PRORP3)proteinaceous RNase P 3 [Source:NCBI gene (formerly Entrezgene);Acc:828279] identity=54.8; qcov=0.998; evalue=0; confidence=high |
| Rice | Os02g0273800 (P0413A11.14-1)- identity=46.5; qcov=0.854; evalue=3.48e-121; confidence=high |
| GO | GO:0001682 (tRNA 5'-leader removal); GO:0004526 (ribonuclease P activity); GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF11977 (RNase_Zc3h12a); PF16953 (PRORP); PF17177 (PPR_long); PF23276 (TPR_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131006964 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057790088.1 |
| 2 | Nucleolus | 核仁 | 0.20000 | XP_057790088.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057790088.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057790088.1 |
| 5 | Mitochondrion | 线粒体 | 0.20000 | XP_057790088.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:21220500 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C28,C54,C8 |
Chr1:21220506 |
CA |
C |
1bp_deletion | frameshift_variant | 111 | A14,A18,A2,A20,A22,A4,A6,A8,A9,B101,B102,B103,B105,B107,B111,B112,B113,B114,B115,B117,B118,B119,B120,B123,B126,B127,B130,B135,B137,B140,B16,B17,B18,B2,B22,B23,B3,B32,B37,B38,B39,B42,B43,B46,B49,B5,B50,B51,B52,B54,B56,B57,B59,B60,B67,B68,B7,B77,B78,B79,B82,B83,B86,B89,B91,B96,B97,B98,B99,C10,C11,C16,C18,C2,C22,C24,C27,C30,C37,C4,C42,C43,C44,C49,C5,C50,C53,C54,C56,C57,C59,C6,C60,C61,C62,C63,C65,C67,C7,C70,C71,C72,C73,C74,C76,C77,C80,C81,C86,C9,D4 |
Chr1:21220550 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C68,D6 |
Chr1:21220611 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr1:21220665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C11,C69,D11 |
Chr1:21220672 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B87,C8 |
Chr1:21220719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:21221459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C20,C26 |
Chr1:21221547 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr1:21221706 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A13,A3,C23 |
Chr1:21222279 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
Chr1:21222293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790088.1PF17177
PPR_long 7-213 aa
PF23276
TPR_24 94-205 aa
PF16953
PRORP 256-481 aa
PF11977
RNase_Zc3h12a 313-440 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790088.1 |
Pfam | PF17177 |
PPR_long | Repeat | 7 | 213 | 1.9e-67 | 227.4 | Pentacotripeptide-repeat region of PRORP |
XP_057790088.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 94 | 205 | 1.3e-05 | 25.9 | Pentatricopeptide repeat-containing protein |
XP_057790088.1 |
Pfam | PF16953 |
PRORP | Domain | 256 | 481 | 2.7e-60 | 204.7 | Protein-only RNase P |
XP_057790088.1 |
Pfam | PF11977 |
RNase_Zc3h12a | Domain | 313 | 440 | 3.6e-07 | 30.7 | Zc3h12a-like Ribonuclease NYN domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。