Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001072`

染色体: Chr01 坐标: 22121188-22123773 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001072`
名称	SmilChr01G001072
描述	uncharacterized SmilChr01G001072
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	22121188 - 22123773 / `-`

ID 对照

NCBI Gene ID	`LOC131007015`
GeneID	`131007015`
locus_tag	`-`
NCBI Name	`LOC131007015`
原始查询	`LOC131007015`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826611]; symbol=AT4G10200; hit=AT4G10200; species=arabidopsis; confidence=medium
产物	TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826611]; symbol=AT4G10200; hit=AT4G10200; species=arabidopsis; confidence=medium
Arabidopsis	`AT4G10200` (AT4G10200) TTF-type zinc finger protein with HAT dimerization domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:826611] identity=43.7; qcov=0.944; evalue=2.37e-166; confidence=medium
Rice	`Os05g0311600` - identity=31.5; qcov=0.144; evalue=2.1e-09; confidence=weak
GO	GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14291 (DUF4371); PF27073 (FAM200-ZBED5_RNase-like)
InterPro	-
eggNOG	-
NR	GeneID:131007015

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790143.1`
2	Cytoplasm	细胞质	0.20000	`XP_057790143.1`
3	Chromosome	染色体	0.00000	`XP_057790143.1`
4	Centromere	着丝粒	0.00000	`XP_057790143.1`
5	Chromatin	染色质	0.00000	`XP_057790143.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:22121434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A7,A8,B119
`Chr1:22121450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B104,B15,C15,C41
`Chr1:22121487`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B99
`Chr1:22121516`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A2,C37
`Chr1:22121521`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B23,B51,B59,C48
`Chr1:22121524`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B27,C10,C13,C2
`Chr1:22121525`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B27,B47,B66,C66,C71
`Chr1:22121536`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B128,B133,B35,B85,B99
`Chr1:22121571`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B38,B94,C26
`Chr1:22121590`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B11,B13,B44,B88,C29
`Chr1:22121594`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B132,B54,C29
`Chr1:22121596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B72,B80,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790143.1

752 aa

376

752

DUF4371

FAM200-ZBED5_RNase-like

Dimer_Tnp_hAT

PF14291 DUF4371 196-433 aa PF27073 FAM200-ZBED5_RNase-like 311-436 aa PF05699 Dimer_Tnp_hAT 709-748 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790143.1`	Pfam	`PF14291`	DUF4371	Domain	196	433	1.1e-42	146.9	ZMYM1/FAM200, RNase-like domain
`XP_057790143.1`	Pfam	`PF27073`	FAM200-ZBED5_RNase-like	Domain	311	436	9.4e-13	48.9	FAM200/ZBED5 RNase-like
`XP_057790143.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	709	748	1.7e-09	38.1	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934160.1
TTATTATGTTGCCTAGAAAATATGCATCGGGTAGTCAAAAAAGAAATAAAAGAAAACGAATTGATGAGGTGATTAAAACCCAAAAAGGAGCCATTAATAAGTTTCTTATACCTAGTTCTAGTTCTTCGGTGAAAGAAGTTGATTTGATTGAAAATGAAGAGGTTGATGCTACTATTGAAAATGAAAATGAAAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGATTGAGATTGAGATT...

CDS

1 records

下载 CDS FASTA

LOC131007015
ATGTTGCCTAGAAAATATGCATCGGGTAGTCAAAAAAGAAATAAAAGAAAACGAATTGATGAGGTGATTAAAACCCAAAAAGGAGCCATTAATAAGTTTCTTATACCTAGTTCTAGTTCTTCGGTGAAAGAAGTTGATTTGATTGAAAATGAAGAGGTTGATGCTACTATTGAAAATGAAAATGAAAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGAATGAGATTGAGATTGAGATTGAGAT...

Protein

1 records

下载 Protein FASTA

XP_057790143.1
MLPRKYASGSQKRNKRKRIDEVIKTQKGAINKFLIPSSSSSVKEVDLIENEEVDATIENENENENENENENENENENENEIEIEIEIENENENENEKLHIEIDDVALNIFDPRTWDNIDNKTRDILIEKGPLREYNLTFPVDELGRHFAYSHYTRKLPNGENQDRKWLVYSKDVNKVYCFCCKLFKSCQSKSLLANEGLNDWKHIHDRLKTHENGVEHINNMRTWIDLHIRLKRNQTIDRDLQLHIKKEKEHWKQVLVRI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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