当前解析结果
SmilChr01G001081| 统一新 Gene ID | SmilChr01G001081 |
|---|---|
| 名称 | SmilChr01G001081 |
| 描述 | uncharacterized SmilChr01G001081 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 22235278 - 22236773 / + |
| NCBI Gene ID | LOC131007020 |
|---|---|
| GeneID | 131007020 |
| locus_tag | - |
| NCBI Name | LOC131007020 |
| 原始查询 | LOC131007020 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0597250; species=rice; confidence=high |
| 产物 | hit=Os06g0597250; species=rice; confidence=high |
| Arabidopsis | AT2G13770 (AT2G13770)nuclease [Source:NCBI gene (formerly Entrezgene);Acc:815861] identity=56.6; qcov=0.244; evalue=1.84e-36; confidence=weak |
| Rice | Os06g0597250- identity=50.1; qcov=0.993; evalue=1.19e-156; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF04827 (Plant_tran); PF13359 (DDE_Tnp_4); PF28509 (DUF8418) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007020 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790150.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057790150.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057790150.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057790150.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057790150.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:22235354 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr1:22235389 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B139 |
Chr1:22235403 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A1,B134,B74 |
Chr1:22235459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr1:22235467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B106,B28,B93,C8 |
Chr1:22235469 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B105,B138,B67 |
Chr1:22235482 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B13,B65,B84 |
Chr1:22235484 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A14,B120 |
Chr1:22235509 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C39,C55 |
Chr1:22235527 |
C |
T |
EMS_canonical_SNV | stop_gained | 25 | A1,A14,B1,B103,B114,B134,B137,B33,B51,B65,B69,B70,B78,B81,B86,B9,C15,C31,C45,C54,C55,C60,C81,D11,D3 |
Chr1:22235538 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,C75 |
Chr1:22235543 |
AT |
A |
1bp_deletion | frameshift_variant | 7 | B128,B134,B137,B70,C15,C31,C55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790150.1PF28509
DUF8418 62-100 aa
PF04827
Plant_tran 169-372 aa
PF13359
DDE_Tnp_4 200-363 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790150.1 |
Pfam | PF28509 |
DUF8418 | Domain | 62 | 100 | 4.5e-18 | 65.4 | Domain of unknown function (DUF8418) |
XP_057790150.1 |
Pfam | PF04827 |
Plant_tran | Family | 169 | 372 | 3.1e-100 | 334.6 | Plant transposon protein |
XP_057790150.1 |
Pfam | PF13359 |
DDE_Tnp_4 | Domain | 200 | 363 | 2.5e-11 | 44.2 | DDE superfamily endonuclease |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。