Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001133`

染色体: Chr01 坐标: 23022208-23026034 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001133`
名称	SmilChr01G001133
描述	zinc finger CCCH domain-containing protein 30-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	23022208 - 23026034 / `+`

ID 对照

NCBI Gene ID	`LOC131007054`
GeneID	`131007054`
locus_tag	`-`
NCBI Name	`LOC131007054`
原始查询	`LOC131007054`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger CCCH domain-containing protein 30-like
产物	zinc finger CCCH domain-containing protein 30-like
Arabidopsis	`AT2G41900` (OXS2) CCCH-type zinc finger protein with ARM repeat domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818790] identity=59.9; qcov=1.03; evalue=0; confidence=high
Rice	`Os03g0698800` (OsC3H24) - identity=57.4; qcov=1.03; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00023 (Ank); PF00642 (zf-CCCH); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF25512 (zf-CCCH_AtC3H23)
InterPro	-
eggNOG	-
NR	GeneID:131007054

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057790182.1`
2	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.60000	`XP_057790182.1`
3	Nucleus	细胞核	0.40000	`XP_057790182.1`
4	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057790182.1`
5	P-body	P-body	0.20000	`XP_057790182.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:23023698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B124,B16,B8,B88,C67
`Chr1:23023832`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr1:23023873`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A20,A23,B28,C1,C32
`Chr1:23024400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B54,D8
`Chr1:23024553`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B124,B8,C22,C67
`Chr1:23024651`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B112
`Chr1:23024651`	`TG`	`T`	1bp_deletion	CDS_variant	1	B112
`Chr1:23024887`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B6,C67
`Chr1:23025204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B13,C32,C39,C68,D4
`Chr1:23025356`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,C16
`Chr1:23025368`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B119,B85
`Chr1:23025430`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790182.1

705 aa

352

705

Ank_2

Ank

Ank_4

Ank_3

Ank

zf-CCCH_AtC3H23

zf-CCCH

PF12796 Ank_2 56-129 aa PF00023 Ank 62-82 aa PF13637 Ank_4 65-112 aa PF13606 Ank_3 96-127 aa PF00023 Ank 96-129 aa PF25512 zf-CCCH_AtC3H23 238-271 aa PF00642 zf-CCCH 282-303 aa

XP_057790183.1

705 aa

352

705

Ank_2

Ank

Ank_4

Ank_3

Ank

zf-CCCH_AtC3H23

zf-CCCH

PF12796 Ank_2 56-129 aa PF00023 Ank 62-82 aa PF13637 Ank_4 65-112 aa PF13606 Ank_3 96-127 aa PF00023 Ank 96-129 aa PF25512 zf-CCCH_AtC3H23 238-271 aa PF00642 zf-CCCH 282-303 aa

XP_057790184.1

705 aa

352

705

Ank_2

Ank

Ank_4

Ank_3

Ank

zf-CCCH_AtC3H23

zf-CCCH

PF12796 Ank_2 56-129 aa PF00023 Ank 62-82 aa PF13637 Ank_4 65-112 aa PF13606 Ank_3 96-127 aa PF00023 Ank 96-129 aa PF25512 zf-CCCH_AtC3H23 238-271 aa PF00642 zf-CCCH 282-303 aa

XP_057790185.1

705 aa

352

705

Ank_2

Ank

Ank_4

Ank_3

Ank

zf-CCCH_AtC3H23

zf-CCCH

PF12796 Ank_2 56-129 aa PF00023 Ank 62-82 aa PF13637 Ank_4 65-112 aa PF13606 Ank_3 96-127 aa PF00023 Ank 96-129 aa PF25512 zf-CCCH_AtC3H23 238-271 aa PF00642 zf-CCCH 282-303 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790182.1`	Pfam	`PF12796`	Ank_2	Repeat	56	129	6.5e-12	46.6	Ankyrin repeats (3 copies)
`XP_057790182.1`	Pfam	`PF00023`	Ank	Repeat	62	82	9.8e-14	51.4	Ankyrin repeat
`XP_057790182.1`	Pfam	`PF13637`	Ank_4	Repeat	65	112	8.9e-09	36.1	Ankyrin repeats (many copies)
`XP_057790182.1`	Pfam	`PF13606`	Ank_3	Repeat	96	127	1.6e-09	37.8	Ankyrin repeat
`XP_057790182.1`	Pfam	`PF00023`	Ank	Repeat	96	129	9.8e-14	51.4	Ankyrin repeat
`XP_057790182.1`	Pfam	`PF25512`	zf-CCCH_AtC3H23	Domain	238	271	2.3e-22	79.1	AtC3H23-like, CCCH zinc finger
`XP_057790182.1`	Pfam	`PF00642`	zf-CCCH	Family	282	303	6.6e-05	23.4	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057790183.1`	Pfam	`PF12796`	Ank_2	Repeat	56	129	6.5e-12	46.6	Ankyrin repeats (3 copies)
`XP_057790183.1`	Pfam	`PF00023`	Ank	Repeat	62	82	9.8e-14	51.4	Ankyrin repeat
`XP_057790183.1`	Pfam	`PF13637`	Ank_4	Repeat	65	112	8.9e-09	36.1	Ankyrin repeats (many copies)
`XP_057790183.1`	Pfam	`PF13606`	Ank_3	Repeat	96	127	1.6e-09	37.8	Ankyrin repeat
`XP_057790183.1`	Pfam	`PF00023`	Ank	Repeat	96	129	9.8e-14	51.4	Ankyrin repeat
`XP_057790183.1`	Pfam	`PF25512`	zf-CCCH_AtC3H23	Domain	238	271	2.3e-22	79.1	AtC3H23-like, CCCH zinc finger
`XP_057790183.1`	Pfam	`PF00642`	zf-CCCH	Family	282	303	6.6e-05	23.4	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057790184.1`	Pfam	`PF12796`	Ank_2	Repeat	56	129	6.5e-12	46.6	Ankyrin repeats (3 copies)
`XP_057790184.1`	Pfam	`PF00023`	Ank	Repeat	62	82	9.8e-14	51.4	Ankyrin repeat
`XP_057790184.1`	Pfam	`PF13637`	Ank_4	Repeat	65	112	8.9e-09	36.1	Ankyrin repeats (many copies)
`XP_057790184.1`	Pfam	`PF13606`	Ank_3	Repeat	96	127	1.6e-09	37.8	Ankyrin repeat
`XP_057790184.1`	Pfam	`PF00023`	Ank	Repeat	96	129	9.8e-14	51.4	Ankyrin repeat
`XP_057790184.1`	Pfam	`PF25512`	zf-CCCH_AtC3H23	Domain	238	271	2.3e-22	79.1	AtC3H23-like, CCCH zinc finger
`XP_057790184.1`	Pfam	`PF00642`	zf-CCCH	Family	282	303	6.6e-05	23.4	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057790185.1`	Pfam	`PF12796`	Ank_2	Repeat	56	129	6.5e-12	46.6	Ankyrin repeats (3 copies)
`XP_057790185.1`	Pfam	`PF00023`	Ank	Repeat	62	82	9.8e-14	51.4	Ankyrin repeat
`XP_057790185.1`	Pfam	`PF13637`	Ank_4	Repeat	65	112	8.9e-09	36.1	Ankyrin repeats (many copies)
`XP_057790185.1`	Pfam	`PF13606`	Ank_3	Repeat	96	127	1.6e-09	37.8	Ankyrin repeat
`XP_057790185.1`	Pfam	`PF00023`	Ank	Repeat	96	129	9.8e-14	51.4	Ankyrin repeat
`XP_057790185.1`	Pfam	`PF25512`	zf-CCCH_AtC3H23	Domain	238	271	2.3e-22	79.1	AtC3H23-like, CCCH zinc finger
`XP_057790185.1`	Pfam	`PF00642`	zf-CCCH	Family	282	303	6.6e-05	23.4	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057934199.1
GCGGCCCAAACGTGGTCTAGTCCGTACCGCCGCCCCTCGTTGTGAGAGATGAAATCGTCATTTTGCATTTCATTCCGCGTCAATTTCAACATCATTTCATTTACCACTAATTTCATCTTCATTTCAATTTCAATTCCAATTTCATTTGCAAAACCGCTCCTCCCCCCTCTCTCTCGCCCTCTCTCTCTCTCTCGAATACAGACATACATGCGCACTGTACCTAAAACATCTCCTCACTCTAGAACAAAAGCAAGCTTCCC...

XM_057934200.1
CAATTTCATTTGCAAAACCGCTCCTCCCCCCTCTCTCTCGCCCTCTCTCTCTCTCTCGAATACAGACATACATGCGCACTGTACCTAAAACATCTCCTCACTCTAGAACAAAAGCAAGCTTCCCCCTTTAGCTTTCTCTCGATTTTTCATCTCTCATCCTCCCGCCTATACACTCCCCTCTCTGTATTTATACAGTGAAAAGGCTTCACAATGAATAGCCTTAATTATGTTACTGATTTTTTCTCGCTCAAGGCAGTAGA...

CDS

4 records

下载 CDS FASTA

LOC131007054
ATGAAGGGAATGGGCCAATTATCTGTAGAGACTGAGGACTCCTTTTCCAGTTTGCTTGAGTATGCGGCTAACAATGATGTTGAAGCTTTCAGGAGAACAATTGAACTTGATTTGTCTGCTGTGGATGAGGCTGGCCCCTGGTATGTTCGTAAGAAAGGTGGAAAGCAGATTGCACAGGAGGAAAGAACACCTTTGATGGTAGCCGCTACATATGGTAGTGTTGATGTGTTGAAGTTGATAGTTGCTCTGCCGGAGGTTGA...

Protein

4 records

下载 Protein FASTA

XP_057790182.1
MKGMGQLSVETEDSFSSLLEYAANNDVEAFRRTIELDLSAVDEAGPWYVRKKGGKQIAQEERTPLMVAATYGSVDVLKLIVALPEVDLNRLCGPDKWTALHCAASGGSVNAVDVVKLLLSAGADPNIEDACGQRPVDLIVVPRGNPSAKAALEDLFMNSYSDGFVGDNSVQVSVTASNASSPVLSSSPDSPCSPSDSASSPTALKLSDIPSNSVSEKKQYPVDPSLPDIRNSIYSTDEFRMYSFKVRPCSRAYSHDWTEC...

XP_057790183.1
MKGMGQLSVETEDSFSSLLEYAANNDVEAFRRTIELDLSAVDEAGPWYVRKKGGKQIAQEERTPLMVAATYGSVDVLKLIVALPEVDLNRLCGPDKWTALHCAASGGSVNAVDVVKLLLSAGADPNIEDACGQRPVDLIVVPRGNPSAKAALEDLFMNSYSDGFVGDNSVQVSVTASNASSPVLSSSPDSPCSPSDSASSPTALKLSDIPSNSVSEKKQYPVDPSLPDIRNSIYSTDEFRMYSFKVRPCSRAYSHDWTEC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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