Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001140`

染色体: Chr01 坐标: 23270547-23274086 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001140`
名称	SmilChr01G001140
描述	zinc finger CCCH domain-containing protein 22-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	23270547 - 23274086 / `-`

ID 对照

NCBI Gene ID	`LOC131007060`
GeneID	`131007060`
locus_tag	`-`
NCBI Name	`LOC131007060`
原始查询	`LOC131007060`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger CCCH domain-containing protein 22-like
产物	zinc finger CCCH domain-containing protein 22-like
Arabidopsis	`AT5G12440` (AT5G12440) CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831119] identity=40.4; qcov=0.911; evalue=9.35e-100; confidence=medium
Rice	`Os03g0328900` (OsC3H22) - identity=39.5; qcov=1.1; evalue=1.85e-106; confidence=medium
GO	GO:0003723 (RNA binding); GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00076 (RRM_1); PF00642 (zf-CCCH); PF23182 (PABC_AtC3H46)
InterPro	-
eggNOG	-
NR	GeneID:131007060

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790189.1`
2	Chromosome	染色体	0.00000	`XP_057790189.1`
3	Centromere	着丝粒	0.00000	`XP_057790189.1`
4	Chromatin	染色质	0.00000	`XP_057790189.1`
5	Telomere	端粒	0.00000	`XP_057790189.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:23271449`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B41,B62,B75,C30
`Chr1:23271753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B41,B62,B75,C30
`Chr1:23271813`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:23272153`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B55,C35
`Chr1:23272177`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:23272282`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:23272905`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,C45,C53,C60
`Chr1:23272914`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A1,B88,C45,C53,C60
`Chr1:23272923`	`TC`	`T`	1bp_deletion	frameshift_variant	51	A1,A13,A14,A16,A19,A21,A23,A4,A8,B104,B117,B119,B120,B121,B131,B137,B139,B18,B20,B32,B34,B42,B45,B53,B59,B6,B71,B87,B88,B90,B92,B93,B96,C1,C16,C17,C23,C27,C36,C40,C44,C45,C53,C55,C57,C58,C60,C62,C80,D10,D3
`Chr1:23272928`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B50,C40,C55
`Chr1:23272936`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B86,B94,C49
`Chr1:23272947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790189.1

604 aa

302

604

PABC_AtC3H46

zf-CCCH

RRM_1

PF23182 PABC_AtC3H46 1-65 aa PF00642 zf-CCCH 198-219 aa PF00076 RRM_1 306-351 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790189.1`	Pfam	`PF23182`	PABC_AtC3H46	Domain	1	65	7.8e-31	106.8	AtC3H46 PABC domain
`XP_057790189.1`	Pfam	`PF00642`	zf-CCCH	Family	198	219	4.5e-06	27.1	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057790189.1`	Pfam	`PF00076`	RRM_1	Domain	306	351	4.1e-06	27.3	RNA recognition motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009095880.1
CCTAAATGGACAGTTTTTTCTCCATTTTCTCCTTTTTCTTAGTTTACTATACTCTCCCTCATTATATTATTATATAGAATGTAATGTAATGATTAGCCAAATATAAGCACCAACTCATCATTACCTTTTATAACATGGTTAAATCTTAGCCCACCCCCTTCCCTAATAATTCCTCAAATTAAATACAATAAATCTCTCTCTCCTCTCTTTCTCTCTCTCGAAGGGGCATTCTCTTACAACATACTCATTTTATAAAACCC...

XM_057934206.1
CCTAAATGGACAGTTTTTTCTCCATTTTCTCCTTTTTCTTAGTTTACTATACTCTCCCTCATTATATTATTATATAGAATGTAATGTAATGATTAGCCAAATATAAGCACCAACTCATCATTACCTTTTATAACATGGTTAAATCTTAGCCCACCCCCTTCCCTAATAATTCCTCAAATTAAATACAATAAATCTCTCTCTCCTCTCTTTCTCTCTCTCGAAGGGGCATTCTCTTACAACATACTCATTTTATAAAACCC...

CDS

1 records

下载 CDS FASTA

LOC131007060
ATGGACACATACGAGGCTACTCAAGTAGTGATGTCAAGGATCCAAAGCTTGGATCCGGAAAGCGCCTCGAAAATCATGGGTTACATACTGATTCAGGATCAGGGCGAGAAGGAGATCATACGCTTAGCATTCGTTCCCGATTCCATTCTGCTCTCCTACATCAACCAAGCAAAGGCCTGTTTGGGAATAACCCCTTCTTCAAAGCCTTTCTCCTCTCCCAGAATCTTGATTCCCAACAATGGCTTCCACTTCAGCAACCC...

Protein

1 records

下载 Protein FASTA

XP_057790189.1
MDTYEATQVVMSRIQSLDPESASKIMGYILIQDQGEKEIIRLAFVPDSILLSYINQAKACLGITPSSKPFSSPRILIPNNGFHFSNPSPSRSSPTPTLSPSPSPSPRPFSYAAALNGSTANANSPASSFNFYGAGGAELPFLDDSAVDPVMSPSGRSDSLLFPYGEEPSPHPFHRRSSSVNDAAFLANMEEGGGFGWRPCMYFARGFCKNGTSCKFLHGGDGDAAAPEVGSPGKGFDDLLRMKALQQHRFALMASSPRGQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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