Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001153`

染色体: Chr01 坐标: 23483744-23488996 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001153`
名称	SmilChr01G001153
描述	ABC transporter B family member 4-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	23483744 - 23488996 / `-`

ID 对照

NCBI Gene ID	`LOC131007071`
GeneID	`131007071`
locus_tag	`-`
NCBI Name	`LOC131007071`
原始查询	`LOC131007071`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ABC transporter B family member 4-like
产物	ABC transporter B family member 4-like
Arabidopsis	`AT2G47000` (ABCB4) ATP binding cassette subfamily B4 [Source:NCBI gene (formerly Entrezgene);Acc:819314] identity=60.4; qcov=1.04; evalue=0; confidence=high
Rice	`Os01g0695700` (OsABCB4) - identity=52.5; qcov=1.04; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG	smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage))
Pfam	PF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro	-
eggNOG	-
NR	GeneID:131007071

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057790198.1`
2	Vacuole	液泡	0.60000	`XP_057790198.1`
3	Vacuole membrane	液泡膜	0.60000	`XP_057790198.1`
4	Nucleus	细胞核	0.00000	`XP_057790198.1`
5	Chromosome	染色体	0.00000	`XP_057790198.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:23483978`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr1:23484242`	`GCC`	`G`	2bp_deletion	frameshift_variant	96	A1,A11,A18,A2,A20,A23,A3,A4,A6,A7,B1,B100,B103,B106,B108,B109,B11,B110,B113,B115,B124,B13,B130,B131,B132,B133,B136,B16,B20,B27,B28,B30,B31,B34,B36,B45,B46,B47,B52,B53,B6,B64,B7,B71,B73,B74,B8,B80,B81,B83,B84,B88,B95,B97,C1,C16,C20,C21,C22,C23,C27,C28,C31,C32,C33,C4,C41,C44,C45,C46,C5,C50,C52,C53,C57,C58,C59,C6,C62,C63,C64,C66,C67,C68,C70,C71,C72,C73,C75,C81,C86,D3,D4,D6,D7,D9
`Chr1:23484246`	`C`	`CGT`	2bp_insertion	frameshift_variant	96	A1,A11,A18,A2,A20,A23,A3,A4,A6,A7,B1,B100,B103,B106,B108,B109,B11,B110,B113,B115,B124,B13,B130,B131,B132,B133,B136,B16,B20,B27,B28,B30,B31,B34,B36,B45,B46,B47,B52,B53,B6,B64,B7,B71,B73,B74,B8,B80,B81,B83,B84,B88,B95,B97,C1,C16,C20,C21,C22,C23,C27,C28,C31,C32,C33,C4,C41,C44,C45,C46,C5,C50,C52,C53,C57,C58,C59,C6,C62,C63,C64,C66,C67,C68,C70,C71,C72,C73,C75,C81,C86,D3,D4,D6,D7,D9
`Chr1:23484272`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B61,B66,B74,C3,C74
`Chr1:23484275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:23484293`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr1:23484419`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:23485361`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:23485370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:23485482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr1:23485536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B130,B23,B93,C27
`Chr1:23485637`	`G`	`A`	EMS_canonical_SNV	stop_gained	88	A1,A11,A13,A18,A2,A20,A23,A3,A4,A6,A7,B1,B100,B103,B106,B108,B109,B11,B113,B115,B13,B130,B131,B132,B133,B136,B20,B27,B28,B30,B31,B34,B36,B45,B46,B47,B52,B53,B6,B64,B7,B71,B73,B74,B78,B8,B80,B81,B83,B84,B95,B97,C1,C16,C21,C22,C23,C27,C28,C30,C31,C32,C33,C4,C44,C45,C46,C5,C50,C52,C57,C58,C59,C62,C63,C64,C66,C68,C70,C72,C73,C75,C86,D3,D4,D6,D7,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790198.1

1206 aa

603

1206

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 31-304 aa PF00005 ABC_tran 372-520 aa PF00664 ABC_membrane 645-913 aa PF00005 ABC_tran 985-1134 aa

XP_057790199.1

1110 aa

555

1110

ABC_membrane

ABC_tran

ABC_membrane

ABC_tran

PF00664 ABC_membrane 2-208 aa PF00005 ABC_tran 276-424 aa PF00664 ABC_membrane 549-817 aa PF00005 ABC_tran 889-1038 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790198.1`	Pfam	`PF00664`	ABC_membrane	Family	31	304	4.6e-111	371.6	ABC transporter transmembrane region
`XP_057790198.1`	Pfam	`PF00005`	ABC_tran	Domain	372	520	3.1e-67	226.1	ABC transporter
`XP_057790198.1`	Pfam	`PF00664`	ABC_membrane	Family	645	913	4.6e-111	371.6	ABC transporter transmembrane region
`XP_057790198.1`	Pfam	`PF00005`	ABC_tran	Domain	985	1134	3.1e-67	226.1	ABC transporter
`XP_057790199.1`	Pfam	`PF00664`	ABC_membrane	Family	2	208	9.4e-101	337.8	ABC transporter transmembrane region
`XP_057790199.1`	Pfam	`PF00005`	ABC_tran	Domain	276	424	2.7e-67	226.3	ABC transporter
`XP_057790199.1`	Pfam	`PF00664`	ABC_membrane	Family	549	817	9.4e-101	337.8	ABC transporter transmembrane region
`XP_057790199.1`	Pfam	`PF00005`	ABC_tran	Domain	889	1038	2.7e-67	226.3	ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057934215.1
ACAAAAAGAAATCAATTTGATGCTAATACATTTATTTAAATTGAGGAACTTTATAAGAGTAGTAGCTATATATGCATAGACATTGCAGGCAAGAAGCTGATCACAGTAAAATTTGAAAGCATATATATGCATTTTAATTGTGAAAAATGATGATTAGATTGTGATATTATTGAAGTTGGTAAGTGAAGATGGGTGATGAACAACGTACATCAATCTCAGGCAAAGTTCCGTACCGCAAACTATTCTCCTTGGCAGATGGA...

XM_057934216.1
TTTCGGAGACCTGGCCAACGCTTTTGCTCACAACGTCGAAACCAAAACAGCTGCCCAACAAGTAGCCAAGTTGTCTCTCAAGTACGTGTATCTCGCGGTGGGGTCTGGCGTTGCAACATTTTCGCCTCGGTGGCAGAGGTGTCGTGCTGGATGATCACGGGGGAAAGGCAGGCTGCACGCATCAGAAACTTGTACCTGAGGGCTGTGCTGAGGCAAGACGTTGGATACTTTGACACAGAGGTGAAAACCGGAGAGATTAT...

CDS

2 records

下载 CDS FASTA

LOC131007071
ATGGGTGATGAACAACGTACATCAATCTCAGGCAAAGTTCCGTACCGCAAACTATTCTCCTTGGCAGATGGAGCTGATCAAGCGCTGATGCTCGTTGGCGCCATCACAGCCGTTGGAAGCGGCCTCTCTATGCCTCTCATGACTCTCATTTTCGGAGACCTGGCCAACGCTTTTGCTCACAACGTCGAAACCAAAACAGCTGCCCAACAAGTAGCCAAGTTGTCTCTCAAGTACGTGTATCTCGCGGTGGGGTCTGGCGT...

LOC131007071
ATGATCACGGGGGAAAGGCAGGCTGCACGCATCAGAAACTTGTACCTGAGGGCTGTGCTGAGGCAAGACGTTGGATACTTTGACACAGAGGTGAAAACCGGAGAGATTATGGAGAGGATCTCAAATGACTCTCTCATCATTCAAGATGCTATGAGTGAGAAGGTGGGAAAGTTTATACAGCTCTCGACATCATTTTTGGGAGGGATTGTGATAGCTTTCATCAAGGGATGGCTCCTTGCTTCAATCTTGCTCTCTGTTAT...

Protein

2 records

下载 Protein FASTA

XP_057790198.1
MGDEQRTSISGKVPYRKLFSLADGADQALMLVGAITAVGSGLSMPLMTLIFGDLANAFAHNVETKTAAQQVAKLSLKYVYLAVGSGVATFSQVSCWMITGERQAARIRNLYLRAVLRQDVGYFDTEVKTGEIMERISNDSLIIQDAMSEKVGKFIQLSTSFLGGIVIAFIKGWLLASILLSVIPLLIISAALMTFLISKLTARGQFAYSKAAVVVEQTITSIRDVASFTGERRAVARYDKSLHGAYEAGVQIGLAAGVGS...

XP_057790199.1
MITGERQAARIRNLYLRAVLRQDVGYFDTEVKTGEIMERISNDSLIIQDAMSEKVGKFIQLSTSFLGGIVIAFIKGWLLASILLSVIPLLIISAALMTFLISKLTARGQFAYSKAAVVVEQTITSIRDVASFTGERRAVARYDKSLHGAYEAGVQIGLAAGVGSGIFMLLLFCSYALAIWFGAIMIVEKGYTGGDVLNVTLAIVMGSFSVGLVTPCLSAFAAGQTASFKLFETMQREPTIDPYNTNGLMLNDMNGDVELR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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