Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G001205`

染色体: Chr01 坐标: 24264180-24277907 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G001205`
名称	SmilChr01G001205
描述	DDT domain-containing protein PTM-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	24264180 - 24277907 / `+`

ID 对照

NCBI Gene ID	`LOC131007116`
GeneID	`131007116`
locus_tag	`-`
NCBI Name	`LOC131007116`
原始查询	`LOC131007116`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DDT domain-containing protein PTM-like
产物	DDT domain-containing protein PTM-like
Arabidopsis	`AT5G12400` (AT5G12400) PHD-finger and DNA binding domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:831115] identity=38; qcov=0.951; evalue=0; confidence=medium
Rice	`Os07g0661550` - identity=46.6; qcov=0.116; evalue=1.04e-58; confidence=weak
GO	-
KEGG	-
Pfam	PF00628 (PHD); PF02791 (DDT); PF15612 (WHIM1); PF21743 (PTM_DIR17_Tudor); PF24294 (Chromo_PTM)
InterPro	-
eggNOG	-
NR	GeneID:131007116

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790254.1`
2	Chromosome	染色体	0.00000	`XP_057790254.1`
3	Centromere	着丝粒	0.00000	`XP_057790254.1`
4	Chromatin	染色质	0.00000	`XP_057790254.1`
5	Telomere	端粒	0.00000	`XP_057790254.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:24264510`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:24264519`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B103,B76
`Chr1:24264567`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,B94
`Chr1:24264575`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B93,B94
`Chr1:24264930`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B62,B66,C47
`Chr1:24264974`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,B41,B89,B99,C69
`Chr1:24264981`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B94,C27
`Chr1:24265127`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B76,B8
`Chr1:24265417`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B112,B29,B88,C32,D4
`Chr1:24265649`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:24265810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B93,B94,C27
`Chr1:24265942`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B76,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790254.1

1775 aa

888

1775

PTM_DIR17_Tudor

DDT

WHIM1

PHD

Chromo_PTM

PF21743 PTM_DIR17_Tudor 5-49 aa PF02791 DDT 458-510 aa PF15612 WHIM1 568-599 aa PF00628 PHD 652-693 aa PF24294 Chromo_PTM 1265-1345 aa

XP_057790255.1

1775 aa

888

1775

PTM_DIR17_Tudor

DDT

WHIM1

PHD

Chromo_PTM

PF21743 PTM_DIR17_Tudor 5-49 aa PF02791 DDT 458-510 aa PF15612 WHIM1 568-599 aa PF00628 PHD 652-693 aa PF24294 Chromo_PTM 1265-1345 aa

XP_057790256.1

1775 aa

888

1775

PTM_DIR17_Tudor

DDT

WHIM1

PHD

Chromo_PTM

PF21743 PTM_DIR17_Tudor 5-49 aa PF02791 DDT 458-510 aa PF15612 WHIM1 568-599 aa PF00628 PHD 652-693 aa PF24294 Chromo_PTM 1265-1345 aa

XP_057790257.1

1771 aa

886

1771

PTM_DIR17_Tudor

DDT

WHIM1

PHD

Chromo_PTM

PF21743 PTM_DIR17_Tudor 5-49 aa PF02791 DDT 458-510 aa PF15612 WHIM1 568-599 aa PF00628 PHD 652-693 aa PF24294 Chromo_PTM 1265-1345 aa

XP_057790258.1

1769 aa

884

1769

PTM_DIR17_Tudor

DDT

WHIM1

PHD

Chromo_PTM

PF21743 PTM_DIR17_Tudor 5-49 aa PF02791 DDT 458-510 aa PF15612 WHIM1 568-599 aa PF00628 PHD 652-693 aa PF24294 Chromo_PTM 1265-1345 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790254.1`	Pfam	`PF21743`	PTM_DIR17_Tudor	Domain	5	49	2.7e-15	56.6	PTM/DIR17-like, Tudor domain
`XP_057790254.1`	Pfam	`PF02791`	DDT	Family	458	510	4.4e-14	53.0	DDT domain
`XP_057790254.1`	Pfam	`PF15612`	WHIM1	Motif	568	599	0.0003	21.0	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057790254.1`	Pfam	`PF00628`	PHD	Domain	652	693	6.2e-08	33.3	PHD-finger
`XP_057790254.1`	Pfam	`PF24294`	Chromo_PTM	Domain	1265	1345	2.9e-29	101.6	Membrane-bound transcription factor PTM, chromo domain-like
`XP_057790255.1`	Pfam	`PF21743`	PTM_DIR17_Tudor	Domain	5	49	2.7e-15	56.6	PTM/DIR17-like, Tudor domain
`XP_057790255.1`	Pfam	`PF02791`	DDT	Family	458	510	4.4e-14	53.0	DDT domain
`XP_057790255.1`	Pfam	`PF15612`	WHIM1	Motif	568	599	0.0003	21.0	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057790255.1`	Pfam	`PF00628`	PHD	Domain	652	693	6.2e-08	33.3	PHD-finger
`XP_057790255.1`	Pfam	`PF24294`	Chromo_PTM	Domain	1265	1345	2.9e-29	101.6	Membrane-bound transcription factor PTM, chromo domain-like
`XP_057790256.1`	Pfam	`PF21743`	PTM_DIR17_Tudor	Domain	5	49	2.7e-15	56.6	PTM/DIR17-like, Tudor domain
`XP_057790256.1`	Pfam	`PF02791`	DDT	Family	458	510	4.4e-14	53.0	DDT domain
`XP_057790256.1`	Pfam	`PF15612`	WHIM1	Motif	568	599	0.0003	21.0	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057790256.1`	Pfam	`PF00628`	PHD	Domain	652	693	6.2e-08	33.3	PHD-finger
`XP_057790256.1`	Pfam	`PF24294`	Chromo_PTM	Domain	1265	1345	2.9e-29	101.6	Membrane-bound transcription factor PTM, chromo domain-like
`XP_057790257.1`	Pfam	`PF21743`	PTM_DIR17_Tudor	Domain	5	49	2.7e-15	56.6	PTM/DIR17-like, Tudor domain
`XP_057790257.1`	Pfam	`PF02791`	DDT	Family	458	510	4.5e-14	53.0	DDT domain
`XP_057790257.1`	Pfam	`PF15612`	WHIM1	Motif	568	599	0.0003	21.0	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057790257.1`	Pfam	`PF00628`	PHD	Domain	652	693	6.2e-08	33.3	PHD-finger
`XP_057790257.1`	Pfam	`PF24294`	Chromo_PTM	Domain	1265	1345	2.9e-29	101.6	Membrane-bound transcription factor PTM, chromo domain-like
`XP_057790258.1`	Pfam	`PF21743`	PTM_DIR17_Tudor	Domain	5	49	2.7e-15	56.6	PTM/DIR17-like, Tudor domain
`XP_057790258.1`	Pfam	`PF02791`	DDT	Family	458	510	4.5e-14	53.0	DDT domain
`XP_057790258.1`	Pfam	`PF15612`	WHIM1	Motif	568	599	0.0003	21.0	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057790258.1`	Pfam	`PF00628`	PHD	Domain	652	693	6.1e-08	33.3	PHD-finger
`XP_057790258.1`	Pfam	`PF24294`	Chromo_PTM	Domain	1265	1345	2.9e-29	101.6	Membrane-bound transcription factor PTM, chromo domain-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057934272.1
CCCTCACACCATCAGCACACCGAACTTTTCCTTTCCCCATTTTAGAGAGAGAAACAAAACCCCTCAACCATCTTCTCTCTCTACCCATAGGGCTTTTTGCAGATCAATTCTGCTGGGGTTTCTCGCACTGACTAATTCTTCATTTTCTCAATTCAACTTCGGCTTCTTAACTTTTTTAGGATATTTTTTTTCTTTCTGAAATTGGGGGATGGACTATGTGGGCAGACGGGTGAAGAAGGAGTTCAAAGGGCACGGGACGT...

XM_057934273.1
CCCTCACACCATCAGCACACCGAACTTTTCCTTTCCCCATTTTAGAGAGAGAAACAAAACCCCTCAACCATCTTCTCTCTCTACCCATAGGGCTTTTTGCAGATCAATTCTGCTGGGGTTTCTCGCACTGACTAATTCTTCATTTTCTCAATTCAACTTCGGCTTCTTAACTTTTTTAGGATATTTTTTTTCTTTCTGAAATTGGGGGATGGACTATGTGGGCAGACGGGTGAAGAAGGAGTTCAAAGGGCACGGGACGT...

CDS

5 records

下载 CDS FASTA

LOC131007116
ATGGACTATGTGGGCAGACGGGTGAAGAAGGAGTTCAAAGGGCACGGGACGTTCTTCGGTTTGGTAAAGGCATACGACGCGGCGACTGGGTTTTTCAAGATCGTATACGACGACGGAGATTCCGAGGAATTGGAGTTGACGGAAGTCTCTTTACTCTCGATGTCCGCCGAGCCTCCGCCGCCGCAGCCGTCGGGATCGTCTGCTGGGAGGCTGGGGCGCAAGCCGAAGAAGCGACGGCGCATTGGTGTAACAGGTAAAGA...

Protein

5 records

下载 Protein FASTA

XP_057790254.1
MDYVGRRVKKEFKGHGTFFGLVKAYDAATGFFKIVYDDGDSEELELTEVSLLSMSAEPPPPQPSGSSAGRLGRKPKKRRRIGVTGKDDDNSTDGAISYSLVDRDGDSGAFDLNLTERLDLNDDAVNCLRDDGHGGNVHGDGTKLHGLDLNEGVNLELDEGLHLNKESIKDDSLERNKMIDLNLDVNEGFEKLSDEREGRCFDLNLQLMEDEVRILEGCDARLGVGENGCSRENMQMKEELVEDDAVGVLENADGDKVDPV...

XP_057790255.1
MDYVGRRVKKEFKGHGTFFGLVKAYDAATGFFKIVYDDGDSEELELTEVSLLSMSAEPPPPQPSGSSAGRLGRKPKKRRRIGVTGKDDDNSTDGAISYSLVDRDGDSGAFDLNLTERLDLNDDAVNCLRDDGHGGNVHGDGTKLHGLDLNEGVNLELDEGLHLNKESIKDDSLERNKMIDLNLDVNEGFEKLSDEREGRCFDLNLQLMEDEVRILEGCDARLGVGENGCSRENMQMKEELVEDDAVGVLENADGDKVDPV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器