当前解析结果
SmilChr01G000368| 统一新 Gene ID | SmilChr01G000368 |
|---|---|
| 名称 | SmilChr01G000368 |
| 描述 | origin of replication complex subunit 1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 7616590 - 7625083 / - |
| NCBI Gene ID | LOC131007146 |
|---|---|
| GeneID | 131007146 |
| locus_tag | - |
| NCBI Name | LOC131007146 |
| 原始查询 | LOC131007146 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | origin of replication complex subunit 1-like |
| 产物 | origin of replication complex subunit 1-like |
| Arabidopsis | AT4G14700 (ORC1A)origin recognition complex 1 [Source:NCBI gene (formerly Entrezgene);Acc:827121] identity=60; qcov=0.968; evalue=0; confidence=high |
| Rice | Os06g0187000 (OsORC1)- identity=60.8; qcov=0.984; evalue=0; confidence=high |
| GO | GO:0003682 (chromatin binding); GO:0003688 (DNA replication origin binding); GO:0005524 (ATP binding); GO:0005664 (nuclear origin of replication recognition complex); GO:0006270 (DNA replication initiation); GO:0016887 (ATP hydrolysis activity); GO:0033314 (mitotic DNA replication checkpoint signaling) |
| KEGG | - |
| Pfam | PF00004 (AAA); PF00628 (PHD); PF01426 (BAH); PF13191 (AAA_16); PF13401 (AAA_22); PF17872 (AAA_lid_10); PF22606 (Cdc6-ORC-like_ATPase_lid) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007146 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790288.1 |
| 2 | Chromosome | 染色体 | 0.40000 | XP_057790288.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057790288.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790288.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790288.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:7617080 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
Chr1:7617295 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B35,B66,B83 |
Chr1:7617805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B54,C1,C37 |
Chr1:7618490 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A3,B130,D7 |
Chr1:7618742 |
CT |
C |
1bp_deletion | frameshift_variant | 3 | B54,C1,C37 |
Chr1:7618742 |
CT |
C |
1bp_deletion | CDS_variant | 3 | B54,C1,C37 |
Chr1:7619009 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B3,C24,C46 |
Chr1:7619420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B101,B126,B85 |
Chr1:7619839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B62,B76 |
Chr1:7619853 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B11 |
Chr1:7620044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:7620079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790288.1PF00628
PHD 210-254 aa
PF01426
BAH 290-379 aa
PF13191
AAA_16 488-631 aa
PF13401
AAA_22 514-640 aa
PF00004
AAA 517-661 aa
PF22606
Cdc6-ORC-like_ATPase_lid 669-722 aa
PF17872
AAA_lid_10 690-725 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790288.1 |
Pfam | PF00628 |
PHD | Domain | 210 | 254 | 6.6e-09 | 36.4 | PHD-finger |
XP_057790288.1 |
Pfam | PF01426 |
BAH | Domain | 290 | 379 | 5.1e-13 | 49.7 | BAH domain |
XP_057790288.1 |
Pfam | PF13191 |
AAA_16 | Domain | 488 | 631 | 1.9e-09 | 39.0 | AAA ATPase domain |
XP_057790288.1 |
Pfam | PF13401 |
AAA_22 | Domain | 514 | 640 | 2.8e-08 | 34.9 | AAA domain |
XP_057790288.1 |
Pfam | PF00004 |
AAA | Domain | 517 | 661 | 3.2e-17 | 63.9 | ATPase family associated with various cellular activities (AAA) |
XP_057790288.1 |
Pfam | PF22606 |
Cdc6-ORC-like_ATPase_lid | Domain | 669 | 722 | 8.8e-10 | 39.1 | Cdc6/ORC-like, ATPase lid domain |
XP_057790288.1 |
Pfam | PF17872 |
AAA_lid_10 | Domain | 690 | 725 | 1.1e-10 | 42.3 | AAA lid domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。