当前解析结果
SmilChr01G000032| 统一新 Gene ID | SmilChr01G000032 |
|---|---|
| 名称 | SmilChr01G000032 |
| 描述 | uncharacterized SmilChr01G000032 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 549504 - 550940 / - |
| NCBI Gene ID | LOC131007175 |
|---|---|
| GeneID | 131007175 |
| locus_tag | - |
| NCBI Name | LOC131007175 |
| 原始查询 | LOC131007175 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | OsRPA1; symbol=OsRPA1; hit=Os03g0214100; species=rice; confidence=low |
| 产物 | OsRPA1; symbol=OsRPA1; hit=Os03g0214100; species=rice; confidence=low |
| Arabidopsis | AT5G08020 (RPA70B)RPA70-kDa subunit B [Source:NCBI gene (formerly Entrezgene);Acc:830696] identity=26.2; qcov=0.744; evalue=4.74e-08; confidence=low |
| Rice | Os03g0214100 (OsRPA1)- identity=33; qcov=0.683; evalue=3.76e-10; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007175 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057790330.1 |
| 2 | Chromosome | 染色体 | 0.80000 | XP_057790330.1 |
| 3 | Telomere | 端粒 | 0.20000 | XP_057790330.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057790330.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057790330.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:549549 |
AC |
A |
1bp_deletion | frameshift_variant | 4 | B137,B21,B56,B96 |
Chr1:549549 |
AC |
A |
1bp_deletion | CDS_variant | 4 | B137,B21,B56,B96 |
Chr1:549568 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,C35 |
Chr1:549596 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A13,B84,C33,C59 |
Chr1:549721 |
C |
CT |
1bp_insertion | frameshift_variant | 3 | A1,B20,C21 |
Chr1:549721 |
C |
CT |
1bp_insertion | CDS_variant | 3 | A1,B20,C21 |
Chr1:549767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:549789 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:549798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B12,B122,B127,B82 |
Chr1:549804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B117,B83,C35,D6 |
Chr1:549815 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B70,B97,C27,C48,D5 |
Chr1:549847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B11,C27 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。