当前解析结果
SmilChr01G000052| 统一新 Gene ID | SmilChr01G000052 |
|---|---|
| 名称 | SmilChr01G000052 |
| 描述 | two-pore potassium channel 5 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 830932 - 832656 / - |
| NCBI Gene ID | LOC131007199 |
|---|---|
| GeneID | 131007199 |
| locus_tag | - |
| NCBI Name | LOC131007199 |
| 原始查询 | LOC131007199 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | two-pore potassium channel 5 |
| 产物 | two-pore potassium channel 5 |
| Arabidopsis | AT4G01840 (KCO5)Ca2+ activated outward rectifying K+ channel 5 [Source:NCBI gene (formerly Entrezgene);Acc:828091] identity=64.3; qcov=0.909; evalue=1.31e-155; confidence=high |
| Rice | Os09g0299400 (TPKC)- identity=57.5; qcov=0.855; evalue=1.17e-129; confidence=high |
| GO | GO:0005509 (calcium ion binding); GO:0009705 (plant-type vacuole membrane); GO:0022841 (potassium ion leak channel activity); GO:0030322 (stabilization of membrane potential); GO:0071805 (potassium ion transmembrane transport) |
| KEGG | - |
| Pfam | PF00520 (Ion_trans); PF07885 (Ion_trans_2); PF13202 (EF-hand_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007199 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057790337.1 |
| 2 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057790337.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057790337.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057790337.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057790337.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:831228 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B104,B139,B16,B18 |
Chr1:831273 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C3,D8 |
Chr1:831312 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:831320 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C45 |
Chr1:831320 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C45 |
Chr1:831513 |
TC |
T |
1bp_deletion | frameshift_variant | 92 | A1,A10,A16,A18,A21,A22,A7,A8,B103,B105,B109,B11,B111,B112,B119,B120,B125,B126,B128,B129,B13,B132,B14,B140,B15,B20,B26,B27,B29,B30,B32,B33,B40,B42,B47,B48,B52,B54,B56,B63,B65,B67,B68,B7,B70,B71,B74,B77,B8,B80,B82,B83,B85,B86,B94,B95,B96,B98,C10,C11,C16,C17,C18,C23,C30,C31,C32,C34,C38,C4,C40,C41,C43,C48,C49,C51,C53,C57,C59,C6,C63,C64,C66,C67,C68,C69,C80,C83,C84,C85,D1,D7 |
Chr1:831516 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B44,B62,C7 |
Chr1:831521 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,D10 |
Chr1:831536 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,C39 |
Chr1:831540 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,D10 |
Chr1:831560 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,C53 |
Chr1:831574 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B91,C7,D10,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790337.1PF00520
Ion_trans 106-185 aa
PF07885
Ion_trans_2 106-186 aa
PF07885
Ion_trans_2 232-301 aa
PF13202
EF-hand_5 327-341 aa
PF13202
EF-hand_5 362-376 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790337.1 |
Pfam | PF00520 |
Ion_trans | Family | 106 | 185 | 2.2e-07 | 31.0 | Ion transport protein |
XP_057790337.1 |
Pfam | PF07885 |
Ion_trans_2 | Family | 106 | 186 | 5.6e-29 | 100.6 | Ion channel |
XP_057790337.1 |
Pfam | PF07885 |
Ion_trans_2 | Family | 232 | 301 | 5.6e-29 | 100.6 | Ion channel |
XP_057790337.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 327 | 341 | 6.4e-07 | 29.3 | EF hand |
XP_057790337.1 |
Pfam | PF13202 |
EF-hand_5 | Domain | 362 | 376 | 6.4e-07 | 29.3 | EF hand |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。