当前解析结果
SmilChr01G000061| 统一新 Gene ID | SmilChr01G000061 |
|---|---|
| 名称 | SmilChr01G000061 |
| 描述 | ABC transporter B family member 4-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 991249 - 996545 / + |
| NCBI Gene ID | LOC131007209 |
|---|---|
| GeneID | 131007209 |
| locus_tag | - |
| NCBI Name | LOC131007209 |
| 原始查询 | LOC131007209 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter B family member 4-like |
| 产物 | ABC transporter B family member 4-like |
| Arabidopsis | AT2G47000 (ABCB4)ATP binding cassette subfamily B4 [Source:NCBI gene (formerly Entrezgene);Acc:819314] identity=75.2; qcov=0.982; evalue=0; confidence=high |
| Rice | Os01g0695700 (OsABCB4)- identity=56.8; qcov=1; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | smil02010 (ABC transporters - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131007209 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057790343.1 |
| 2 | Vacuole | 液泡 | 0.40000 | XP_057790343.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.40000 | XP_057790343.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057790343.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057790343.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:992225 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B136,B41,C37,C87 |
Chr1:992335 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A5 |
Chr1:992619 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B98 |
Chr1:992619 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B98 |
Chr1:992918 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D8 |
Chr1:993099 |
GAA |
G |
2bp_deletion | frameshift_variant | 1 | B45 |
Chr1:993099 |
GAA |
G |
2bp_deletion | CDS_variant | 1 | B45 |
Chr1:993269 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B41 |
Chr1:994609 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B2,B65 |
Chr1:995076 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D4 |
Chr1:995304 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A16,B41,C18 |
Chr1:996079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A16 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057790343.1PF00664
ABC_membrane 43-315 aa
PF00005
ABC_tran 383-531 aa
PF00664
ABC_membrane 700-972 aa
PF00005
ABC_tran 1041-1190 aa
XP_057790344.1PF00664
ABC_membrane 43-315 aa
PF00005
ABC_tran 383-531 aa
PF00664
ABC_membrane 700-972 aa
PF00005
ABC_tran 1041-1190 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057790343.1 |
Pfam | PF00664 |
ABC_membrane | Family | 43 | 315 | 2.6e-120 | 401.9 | ABC transporter transmembrane region |
XP_057790343.1 |
Pfam | PF00005 |
ABC_tran | Domain | 383 | 531 | 3.5e-71 | 238.9 | ABC transporter |
XP_057790343.1 |
Pfam | PF00664 |
ABC_membrane | Family | 700 | 972 | 2.6e-120 | 401.9 | ABC transporter transmembrane region |
XP_057790343.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1041 | 1190 | 3.5e-71 | 238.9 | ABC transporter |
XP_057790344.1 |
Pfam | PF00664 |
ABC_membrane | Family | 43 | 315 | 2.6e-120 | 401.9 | ABC transporter transmembrane region |
XP_057790344.1 |
Pfam | PF00005 |
ABC_tran | Domain | 383 | 531 | 3.5e-71 | 238.9 | ABC transporter |
XP_057790344.1 |
Pfam | PF00664 |
ABC_membrane | Family | 700 | 972 | 2.6e-120 | 401.9 | ABC transporter transmembrane region |
XP_057790344.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1041 | 1190 | 3.5e-71 | 238.9 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。