Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000063`

染色体: Chr01 坐标: 1048335-1051703 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000063`
名称	SmilChr01G000063
描述	uncharacterized SmilChr01G000063
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	1048335 - 1051703 / `-`

ID 对照

NCBI Gene ID	`LOC131007210`
GeneID	`131007210`
locus_tag	`-`
NCBI Name	`LOC131007210`
原始查询	`LOC131007210`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os10g0195100; species=rice; confidence=low
产物	hit=Os10g0195100; species=rice; confidence=low
Arabidopsis	`AT1G40087` (AT1G40087) Plant transposase (Ptta/En/Spm family) [Source:NCBI gene (formerly Entrezgene);Acc:840721] identity=27.5; qcov=0.624; evalue=1.27e-09; confidence=low
Rice	`Os10g0195100` - identity=28.6; qcov=0.675; evalue=1.82e-15; confidence=low
GO	-
KEGG	-
Pfam	PF03004 (Transposase_24); PF03017 (Transposase_23); PF26133 (DUF8039)
InterPro	-
eggNOG	-
NR	GeneID:131007210

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790345.1`
2	Chromosome	染色体	0.00000	`XP_057790345.1`
3	Centromere	着丝粒	0.00000	`XP_057790345.1`
4	Chromatin	染色质	0.00000	`XP_057790345.1`
5	Telomere	端粒	0.00000	`XP_057790345.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:1048570`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B81
`Chr1:1048570`	`AT`	`A`	1bp_deletion	CDS_variant	1	B81
`Chr1:1048578`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B138,C41,C42
`Chr1:1048581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B132,B15,B16
`Chr1:1048585`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr1:1048681`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A1,B108,C45
`Chr1:1048682`	`C`	`T`	EMS_canonical_SNV	stop_gained	26	A4,B1,B10,B137,B20,B24,B38,B4,B54,B56,B7,B96,C20,C22,C26,C31,C33,C39,C4,C48,C51,C59,C76,C84,C85,D2
`Chr1:1048683`	`C`	`T`	EMS_canonical_SNV	stop_gained	31	A18,B111,B119,B122,B124,B125,B136,B17,B19,B20,B28,B29,B33,B46,B49,B65,B80,B85,B89,B92,C14,C16,C22,C39,C46,C5,C57,C58,C60,C61,C62
`Chr1:1048707`	`T`	`TC`	1bp_insertion	frameshift_variant	33	A10,A22,A23,B102,B103,B104,B105,B118,B119,B120,B124,B139,B37,B46,B49,B64,B66,B85,B86,B91,B95,B97,C13,C29,C32,C35,C41,C70,C73,C75,C81,C83,C9
`Chr1:1048710`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B109,B54,C16
`Chr1:1048771`	`T`	`TC`	1bp_insertion	frameshift_variant	21	A15,B11,B118,B12,B130,B139,B32,B34,B37,B63,B66,B78,B95,B97,C17,C29,C35,C40,C73,C81,C9
`Chr1:1048788`	`CA`	`C`	1bp_deletion	frameshift_variant	6	B19,B80,B82,C5,C58,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790345.1

274 aa

137

274

Transposase_24

Transposase_23

DUF8039

PF03004 Transposase_24 1-120 aa PF03017 Transposase_23 195-259 aa PF26133 DUF8039 200-270 aa

XP_057790346.1

274 aa

137

274

Transposase_24

Transposase_23

DUF8039

PF03004 Transposase_24 1-120 aa PF03017 Transposase_23 195-259 aa PF26133 DUF8039 200-270 aa

XP_057790348.1

274 aa

137

274

Transposase_24

Transposase_23

DUF8039

PF03004 Transposase_24 1-120 aa PF03017 Transposase_23 195-259 aa PF26133 DUF8039 200-270 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790345.1`	Pfam	`PF03004`	Transposase_24	Family	1	120	3.1e-23	83.2	Plant transposase (Ptta/En/Spm family)
`XP_057790345.1`	Pfam	`PF03017`	Transposase_23	Domain	195	259	3.3e-13	50.0	TNP1/EN/SPM transposase
`XP_057790345.1`	Pfam	`PF26133`	DUF8039	Domain	200	270	1.4e-06	29.4	Domain of unknown function (DUF8039)
`XP_057790346.1`	Pfam	`PF03004`	Transposase_24	Family	1	120	3.1e-23	83.2	Plant transposase (Ptta/En/Spm family)
`XP_057790346.1`	Pfam	`PF03017`	Transposase_23	Domain	195	259	3.3e-13	50.0	TNP1/EN/SPM transposase
`XP_057790346.1`	Pfam	`PF26133`	DUF8039	Domain	200	270	1.4e-06	29.4	Domain of unknown function (DUF8039)
`XP_057790348.1`	Pfam	`PF03004`	Transposase_24	Family	1	120	3.1e-23	83.2	Plant transposase (Ptta/En/Spm family)
`XP_057790348.1`	Pfam	`PF03017`	Transposase_23	Domain	195	259	3.3e-13	50.0	TNP1/EN/SPM transposase
`XP_057790348.1`	Pfam	`PF26133`	DUF8039	Domain	200	270	1.4e-06	29.4	Domain of unknown function (DUF8039)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057934363.1
ATACACTTTCAGGTATGACTACTAGAACTCGAAAGCGAAAGCAGAGTACTTTAAGCTTGTCAGATGAGCCAGTGCACCAGCCACGTAGTACGACAACTAGAACTCAAGTGGGTAGACGAGTAACCAATGGGGTTGTACAAGACAGGTAAACTCATGACCAGATGCTGCCTAGACCACATACACATGTCCAAGCTAATTTAGCGCTCACTAATCAACCAGGTAGTCAAGTTCCTAGTTCGCTTGTTGAAGAGCCAATACAA...

XM_057934365.1
TTTCAGGTATGACTACTAGAACTCGAAAGCGAAAGCAGAGTACTTTAAGCTTGTCAGATGAGCCAGTGCACCAGCCACGTAGTACGACAACTAGAACTCAAGTGGGTAGACGAGTAACCAATGGGGTTGTACAAGACAGGTAAACTCATGACCAGATGCTGCCTAGACCACATACACATGTCCAAGCTAATTTAGCGCTCACTAATCAACCAGATAACTATTTGGTAGGTAGTCAAGTTCCTAGTTCGCTTGTTGAAGAG...

CDS

3 records

下载 CDS FASTA

LOC131007210
ATGCTTGTTTATTGGAACAAAGAGGAAGTAAAGGCGAGAAGTGAAAAGAATCAAGTTGCTAGATCAAAGAGAACCATGAATCATCTTACTGGAAAAATGTCATTCGCTCAAGTTCAAGACAAACTGGCGAAAGAAAAAGGACATCCTCCATCTCGTGCTGAACTGTTCGACTCGTGCTATACAAGTAAAAATGGAAATACTTCCCCTCTTGTGTCCAAGTATTTGGAAGAAATTGAAGAATTAAGAAGCCAACTCCCAGA...

Protein

3 records

下载 Protein FASTA

XP_057790345.1
MLVYWNKEEVKARSEKNQVARSKRTMNHLTGKMSFAQVQDKLAKEKGHPPSRAELFDSCYTSKNGNTSPLVSKYLEEIEELRSQLPEGFEDTVGPNDLYAQVTGQDKPGCVRMFGEGVSPSDVWGEVPNRNMCKRVMLEQRSEMLKMKNKIEELQARLLAHQNSLSQSSQCITSVSNDLPRMISSNQHLQVGVHVALKSVSRQGKIVAKGCVHSTNPNAEVGRQVMGENWCQVQVKVVLESEERLIRPYGYCQTLGNALG...

XP_057790346.1
MLVYWNKEEVKARSEKNQVARSKRTMNHLTGKMSFAQVQDKLAKEKGHPPSRAELFDSCYTSKNGNTSPLVSKYLEEIEELRSQLPEGFEDTVGPNDLYAQVTGQDKPGCVRMFGEGVSPSDVWGEVPNRNMCKRVMLEQRSEMLKMKNKIEELQARLLAHQNSLSQSSQCITSVSNDLPRMISSNQHLQVGVHVALKSVSRQGKIVAKGCVHSTNPNAEVGRQVMGENWCQVQVKVVLESEERLIRPYGYCQTLGNALG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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