Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G000136`

染色体: Chr01 坐标: 2288363-2294023 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G000136`
名称	SmilChr01G000136
描述	ubiquitin-40S ribosomal protein S27a-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	2288363 - 2294023 / `-`

ID 对照

NCBI Gene ID	`LOC131007260`
GeneID	`131007260`
locus_tag	`-`
NCBI Name	`LOC131007260`
原始查询	`LOC131007260`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin-40S ribosomal protein S27a-like
产物	ubiquitin-40S ribosomal protein S27a-like
Arabidopsis	`AT4G05320` (UBQ10) polyubiquitin 10 [Source:NCBI gene (formerly Entrezgene);Acc:825880] identity=100; qcov=0.655; evalue=6.84e-107; confidence=high
Rice	`Os01g0328400` (RPS27a) - identity=95.5; qcov=0.668; evalue=2.29e-105; confidence=high
GO	GO:0003735 (structural constituent of ribosome); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005840 (ribosome); GO:0006412 (translation); GO:0016567 (protein ubiquitination); GO:0019941 (modification-dependent protein catabolic process); GO:0031386 (protein tag activity); GO:0031625 (ubiquitin protein ligase binding)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage)); smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00240 (ubiquitin); PF01599 (Ribosomal_S27); PF11976 (Rad60-SLD); PF13881 (Rad60-SLD_2); PF14560 (Ubiquitin_2)
InterPro	-
eggNOG	-
NR	GeneID:131007260

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057790398.1`
2	Nucleoplasm	核质	1.00000	`XP_057790398.1`
3	Cytoplasm	细胞质	1.00000	`XP_057790398.1`
4	Cytosol	细胞质基质	1.00000	`XP_057790398.1`
5	Nuclear body	核内小体	0.20000	`XP_057790398.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:2288583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B11,C27,C41
`Chr1:2288610`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C22
`Chr1:2288819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B33,B98,C2
`Chr1:2288843`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,B98
`Chr1:2288849`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B33,B98
`Chr1:2288930`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr1:2288960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B123,B35,B40
`Chr1:2288981`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C32,C39,C68
`Chr1:2293871`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:2293877`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C8
`Chr1:2293877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr1:2293886`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057790398.1

232 aa

116

232

Rad60-SLD

ubiquitin

Ubiquitin_2

Rad60-SLD_2

Rad60-SLD

ubiquitin

Rad60-SLD_2

Ubiquitin_2

Ribosomal_S27

PF11976 Rad60-SLD 1-71 aa PF00240 ubiquitin 3-74 aa PF14560 Ubiquitin_2 12-69 aa PF13881 Rad60-SLD_2 13-72 aa PF11976 Rad60-SLD 77-147 aa PF00240 ubiquitin 79-150 aa PF13881 Rad60-SLD_2 86-167 aa PF14560 Ubiquitin_2 87-145 aa PF01599 Ribosomal_S27 178-225 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057790398.1`	Pfam	`PF11976`	Rad60-SLD	Family	1	71	1.4e-34	118.4	Ubiquitin-2 like Rad60 SUMO-like
`XP_057790398.1`	Pfam	`PF00240`	ubiquitin	Domain	3	74	7.9e-66	218.5	Ubiquitin family
`XP_057790398.1`	Pfam	`PF14560`	Ubiquitin_2	Domain	12	69	3.4e-11	44.2	Ubiquitin-like domain
`XP_057790398.1`	Pfam	`PF13881`	Rad60-SLD_2	Domain	13	72	1e-07	32.8	Ubiquitin-2 like Rad60 SUMO-like
`XP_057790398.1`	Pfam	`PF11976`	Rad60-SLD	Family	77	147	1.4e-34	118.4	Ubiquitin-2 like Rad60 SUMO-like
`XP_057790398.1`	Pfam	`PF00240`	ubiquitin	Domain	79	150	7.9e-66	218.5	Ubiquitin family
`XP_057790398.1`	Pfam	`PF13881`	Rad60-SLD_2	Domain	86	167	1e-07	32.8	Ubiquitin-2 like Rad60 SUMO-like
`XP_057790398.1`	Pfam	`PF14560`	Ubiquitin_2	Domain	87	145	3.4e-11	44.2	Ubiquitin-like domain
`XP_057790398.1`	Pfam	`PF01599`	Ribosomal_S27	Domain	178	225	6.5e-27	93.7	Ribosomal protein S27a

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057934415.1
CCCATCCCAAACTCGCACCCTACAAGATGCAGATATTCGTGAAAACCCTAACGGGTAAGACCATCACGTTGGAGGTTGAATCCTCCGACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGCGGTGGCATGCAG...

CDS

1 records

下载 CDS FASTA

LOC131007260
ATGCAGATATTCGTGAAAACCCTAACGGGTAAGACCATCACGTTGGAGGTTGAATCCTCCGACACGATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGCGGTGGCATGCAGATATTCGTGAAAACCCTAACGGGTAA...

Protein

1 records

下载 Protein FASTA

XP_057790398.1
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKTAGD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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